SCN Proteipedia

Hg_chrom2_TN10mRNA_3689

Organism: Heterodera glycines Gene Locus: chr2:7927877-7932618 Feature type: polypeptide

Protein Sequence

Length: 963

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.906	0.918	0.755	0.43	1.35	0.959	0.68	1.142	1.361	1.361	0.85	2.504	1.471	0.519	1.187	0.994	0.868	0.787	1.198	1.222	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3504	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom2_TN10mRNA_3689	10-Pre_planta	0.990

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.064	0.095	0.068	0.186	0.400	0.539	0.223	0.005	0.660	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007011	1.000	1.000	Hsc_gene_4768.t1	Hsc_gene_4768.t1;Hsc_gene_4768.t2	—	Q8NET8.2 Transient receptor potential cation channel subfamily V member 3 [Homo sapiens]	WCZ40786.1 OSM-9, partial [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0005515\|GO:0006811\|GO:0016020	GO:0008150_0.932\|GO:0009987_0.894\|GO:0003674_0.878\|GO:0005575_0.860\|GO:0110165_0.860\|GO:0051179_0.841\|GO:0006810_0.832\|GO:0051234_0.832\|GO:0016020_0.822\|GO:0055085_0.756\|GO:0005886_0.733\|GO:0071944_0.733\|GO:0006811_0.717\|GO:0034220_0.715\|GO:0005215_0.690\|GO:0022857_0.690\|GO:0006812_0.686\|GO:0098655_0.684\|GO:0015075_0.675\|GO:0015267_0.674\|GO:0022803_0.674\|GO:0005216_0.672\|GO:0098660_0.661\|GO:0008324_0.656\|GO:0030001_0.650\|GO:0005261_0.649\|GO:0098662_0.644\|GO:0015318_0.623\|GO:0006816_0.613\|GO:0022890_0.613\|GO:0046873_0.613\|GO:0070588_0.612\|GO:0005262_0.589\|GO:0015085_0.589\|GO:0065007_0.554\|GO:0005488_0.529	IPR002110+172-201_172-204_173-202_229-258_229-261_236-320_262-291_298-326+\|IPR024862+32-789+\|IPR036770+96-373_122-319+	SM00248+172-201_229-258_262-291_298-326+	PF00023+173-202+Ankyrin_repeat\|PF12796+236-320+Ankyrin_repeats_(3_copies)	—	PTHR10582+32-789+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	759-842;902-963	2.000	1-758;843-901	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.531	110362.920	6.732	3.000	25.961	13.292	45.898	54.102	13.707	12.253	42.991

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	460.400	719.638	770.522	299.808	79.282	88.156	84.218	301.635	702.769	608.450	648.872

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.133	-1.400	-1.252	-1.950	—	—	1.671	-1.697	—	—	—	—	6.858

No JSON data available for plots.

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