Hg_chrom2_TN10mRNA_3691
Organism: Heterodera glycines Gene Locus: chr2:7938573-7940147 Feature type: polypeptideProtein Sequence
Length: 362
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 0.964 | 0.703 | 0.191 | 0.506 | 0.779 | 1.052 | 0.967 | 1.044 | 1.195 | 1.214 | 1.95 | 1.995 | 0.85 | 1.579 | 1.302 | 0.725 | 1.214 | 0.637 | 0.731 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3506
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_3691
|
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
golgi_apparatus
|
mitochondria
|
KKLGRKQSKAMRRREKN,KRLKDLFAPRGDGKKLGRK,PRGDGKKLGRKQSKAMRRREK
|
24-55
|
0.923
|
— | — |
1-29
|
— |
0.999
|
— |
0.000
|
0.352
|
0.383
|
0.081
|
0.447
|
0.276
|
0.488
|
0.507
|
0.005
|
0.472
|
0.354
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007012
|
1.000
|
1.000
|
Hsc_gene_4770.t1
|
Hsc_gene_4770.t1
|
— |
Q9SF47.1 Phosphatidate phosphatase PAH1 [Arabidopsis thaliana]
|
KAG9510298.1 Stress-induced-phosphoprotein 1 [Fragariocoptes setiger]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.793|GO:0110165_0.782|GO:0008150_0.737|GO:0009987_0.680|GO:0005622_0.671|GO:0016020_0.617|GO:0043226_0.603|GO:0003674_0.597|GO:0043229_0.594|GO:0005737_0.593|GO:0043227_0.566|GO:0043231_0.553|GO:0008152_0.537|GO:0044238_0.530|GO:0009058_0.526|GO:0044237_0.526|GO:0044249_0.501
|
IPR013209+131-359+|IPR023214+170-270+|IPR026058+132-360+|IPR031315+172-334+|IPR036412+165-323+
|
SM00775+172-334+
|
PF08235+131-359+LNS2_(Lipin/Ned1/Smp2)
|
— |
PTHR12181+132-360+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-362
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
40567.230
|
11.123
|
35.500
|
24.586
|
12.431
|
45.304
|
54.696
|
17.680
|
6.906
|
48.895
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
397.839
|
80.664
|
225.803
|
124.183
|
30.641
|
11.556
|
29.391
|
79.115
|
1552.482
|
358.175
|
870.021
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.257
|
0.485
|
-0.755
|
-2.053
|
-1.392
|
1.357
|
2.673
|
-1.287
|
— |
-3.490
|
— | — | — |