Hg_chrom2_TN10mRNA_3693
Organism: Heterodera glycines Gene Locus: chr2:7943332-7946796 Feature type: polypeptideProtein Sequence
Length: 599
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.874 | 1.009 | 0.698 | 0.345 | 1.252 | 1.712 | 0.815 | 1.419 | 0.631 | 1.218 | 0.961 | 1.178 | 1.067 | 0.738 | 1.942 | 1.55 | 0.794 | 0.632 | 0.514 | 0.442 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3508
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3693
|
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— |
KRVK,RRGFDDERLMRKRFS,RRLNLNDGATKRATR,KKDESKLSLADRRYRV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.149
|
0.328
|
0.026
|
0.648
|
0.082
|
0.161
|
0.243
|
0.106
|
0.581
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007014
|
1.000
|
1.000
|
Hsc_gene_4773.t1
|
Hsc_gene_4772.t1;Hsc_gene_4773.t1
|
— |
Q19601.2 Globin-related protein glb-13 [Caenorhabditis elegans]
|
KAF7637056.1 GLOBIN domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019825|GO:0020037
|
GO:0003674_0.838|GO:0005488_0.813|GO:0097159_0.725|GO:0036094_0.666|GO:0043167_0.666|GO:0043169_0.661|GO:0046872_0.658|GO:0046914_0.655|GO:0005506_0.650|GO:0019825_0.650|GO:0020037_0.650|GO:0046906_0.650
|
IPR000971+135-281_161-255+|IPR009050+130-290+|IPR012292+134-298+|IPR044399+143-285+|IPR053341+66-300+
|
— |
PF00042+161-255+Globin
|
— |
PTHR47768+66-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-131;351-599
|
1.000
|
132-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.868
|
67339.640
|
10.515
|
35.500
|
30.050
|
8.848
|
56.761
|
43.239
|
18.698
|
11.352
|
47.245
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
green
|
821.809
|
228.650
|
464.153
|
256.781
|
109.164
|
68.059
|
190.972
|
217.764
|
1110.185
|
2186.945
|
1725.477
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
— |
-0.746
|
-1.265
|
-0.667
|
1.499
|
1.576
|
— | — |
-1.949
|
-3.934
|
— | — |
No JSON data available for plots.