SCN Proteipedia

Hg_chrom2_TN10mRNA_3695

Organism: Heterodera glycines Gene Locus: chr2:7949488-7968758 Feature type: polypeptide

Protein Sequence

Length: 853 (Signal peptide: 1-28)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.763	1.39	0.895	1.213	1.524	2.224	1.144	0.645	0.729	0.713	1.03	1.724	0.684	1.037	1.124	0.804	1.172	0.533	0.541	0.483	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3510	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom2_TN10mRNA_3695	8-Eggs_J4_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	—	extracellular	nucleus	RKYLEQLMDSETGRNKTK,KKTVNEPNDSGKSQKMKRR	—	—	—	—	1-28	0.503	0.998	0.000	0.000	0.255	0.242	0.037	0.368	0.059	0.020	0.052	0.125	0.287	0.809

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003370	1.000	2.000	Hsc_gene_4775.t1;Hsc_gene_4775.t2	—	—	Q9NPF0.1 CD320 antigen [Homo sapiens]	KAF7637060.1 Chitin-binding type-2 domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005576\|GO:0008061	GO:0005575_0.926\|GO:0110165_0.923\|GO:0016020_0.800\|GO:0008150_0.783\|GO:0009987_0.735\|GO:0065007_0.727\|GO:0050789_0.717\|GO:0003674_0.703\|GO:0005622_0.696\|GO:0005488_0.695\|GO:0043226_0.642\|GO:0071944_0.633\|GO:0043229_0.610\|GO:0005886_0.609\|GO:0043227_0.589\|GO:0005737_0.584\|GO:0051179_0.569\|GO:0043231_0.557\|GO:0006810_0.548\|GO:0051234_0.548\|GO:0050794_0.538\|GO:0032501_0.508\|GO:0071705_0.505	IPR002172+139-176_139-177_139-178_144-176_152-173_178-215_179-214_179-215_190-211_216-252_216-253_216-254_217-252_228-249_258-297_260-295_270-291+\|IPR002557+56-129_57-129_184-239+\|IPR023415+192-217_230-252+\|IPR036055+135-178_139-177_177-214_179-215_216-253_216-254_260-296_260-298+\|IPR050685+108-296+	SM00192+139-178_179-215_216-254_258-297+\|SM00494+57-129_184-239+	PF00057+139-176_179-214_216-252+Low-density_lipoprotein_receptor_domain_class_A	—	PTHR24270+108-296+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	295-853	1.000	1-294	8ufb_U	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.728	94081.420	5.414	-9.500	27.667	6.096	55.100	44.900	13.599	14.068	52.286

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	green	77334.919	1474.530	420.234	543.395	772.549	1379.188	371.783	910.628	254179.444	145503.574	192078.947

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.044	-1.577	0.482	0.475	0.852	-1.881	-0.710	-1.146	—	-8.692	-7.266	—	—

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