Hg_chrom2_TN10mRNA_3698
Organism: Heterodera glycines Gene Locus: chr2:7973282-7975079 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 1.152 | 0.675 | 0.747 | 0.826 | 0.556 | 0.958 | 0.929 | 1.789 | 1.506 | 0.985 | 1.093 | 2.15 | 0.774 | 1.011 | 0.973 | 0.66 | 0.844 | 0.953 | 1.093 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3513
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.643
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
25-53
|
0.935
|
— | — | — | — |
0.001
|
— | — |
0.091
|
0.344
|
0.038
|
0.236
|
0.830
|
0.203
|
0.231
|
0.021
|
0.137
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007017
|
1.000
|
1.000
|
Hsc_gene_4778.t1
|
Hsc_gene_4778.t1
|
— |
O70503.1 Very-long-chain 3-oxoacyl-CoA reductase [Mus musculus]
|
KAI1732243.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0005575_0.820|GO:0110165_0.820|GO:0005622_0.680|GO:0008150_0.678|GO:0003674_0.677|GO:0016020_0.667|GO:0005737_0.655|GO:0043226_0.616|GO:0043229_0.603|GO:0043227_0.564|GO:0043231_0.550|GO:0003824_0.516|GO:0009987_0.514
|
IPR002347+58-75_59-235_133-144_182-198_188-196_208-227+|IPR020904+195-223+|IPR036291+54-260+|IPR051019+36-278+
|
— |
PF00106+59-235+short_chain_dehydrogenase
|
— |
PTHR43899+36-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
315-323
|
1.000
|
1-314
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
36361.390
|
9.252
|
12.000
|
21.981
|
14.551
|
39.938
|
60.062
|
13.313
|
8.669
|
45.820
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
642.259
|
242.093
|
552.381
|
1070.946
|
816.473
|
492.782
|
300.444
|
586.520
|
847.092
|
651.448
|
735.296
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.963
|
2.009
|
1.063
|
-0.423
|
-0.714
|
-0.706
|
— |
-0.823
|
— | — | — | — | — |
No JSON data available for plots.