Hg_chrom2_TN10mRNA_3701
Organism: Heterodera glycines Gene Locus: chr2:7983827-7986702 Feature type: polypeptideProtein Sequence
Length: 710
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 1.245 | 0.589 | 0.437 | 1.549 | 1.264 | 0.721 | 0.915 | 1.095 | 1.332 | 1.024 | 1.326 | 1.291 | 0.948 | 2.185 | 1.026 | 0.577 | 0.64 | 1.192 | 0.29 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3516
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
PKPS,RKRR,RKSK,RRRR,RKLKRKR,KRRAEMKLAEKRRAE,RKALDRLEGERKRLE,RKSEERKRTGGKRKKTD,KRRAETNGRKSEERKRTG,KRWTNAILELSGAGKAIRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.251
|
0.188
|
0.087
|
0.120
|
0.131
|
0.060
|
0.167
|
0.091
|
0.231
|
0.855
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003372
|
1.000
|
2.000
|
Hsc_gene_4782.t1;Hsc_gene_4782.t2
|
Hsc_gene_4781.t1;Hsc_gene_4782.t1;Hsc_gene_4782.t2
|
— | — |
KAI1711291.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006954+267-360+
|
— |
PF04870+267-360+Moulting_cycle
|
— |
PTHR21523+58-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
42-128;643-710
|
2.000
|
1-41;129-642
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
81833.640
|
10.608
|
41.500
|
31.831
|
9.014
|
52.817
|
47.183
|
19.296
|
12.535
|
42.254
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
153.915
|
128.688
|
76.202
|
39.848
|
43.564
|
145.291
|
53.743
|
57.089
|
479.190
|
109.825
|
268.124
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.989
|
-1.828
|
-0.823
|
— |
1.755
|
-1.424
|
-1.457
|
— | — |
-3.387
|
— | — | — |
No JSON data available for plots.