SCN Proteipedia

Hg_chrom2_TN10mRNA_3702

Organism: Heterodera glycines Gene Locus: chr2:7988160-7990918 Feature type: polypeptide

Protein Sequence

Length: 534

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.784	1.045	1.226	0.839	1.654	1.056	0.647	0.936	1.623	1.113	0.851	1.102	1.925	0.9	1.147	1.017	0.706	0.709	0.432	0.386	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3517	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	RKGLPKEQMQQQKAEKR	—	—	4-44	0.919	—	—	0.000	—	—	0.399	0.123	0.012	0.681	0.122	0.401	0.255	0.032	0.104	0.050

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001851	3.000	1.000	Hsc_gene_4783.t1	Hsc_gene_4783.t1	—	Q62559.2 Intraflagellar transport protein 52 homolog [Mus musculus]	KAH7729956.1 intraflagellar transport protein 52 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.941\|GO:0005575_0.908\|GO:0110165_0.901\|GO:0009987_0.882\|GO:0005622_0.857\|GO:0016020_0.818\|GO:0043226_0.804\|GO:0071840_0.762\|GO:0016043_0.758\|GO:0051179_0.748\|GO:0043227_0.746\|GO:0006810_0.742\|GO:0051234_0.742\|GO:0051641_0.714\|GO:0071944_0.714\|GO:0006996_0.713\|GO:0044085_0.701\|GO:0051649_0.701\|GO:0005886_0.700\|GO:0033036_0.696\|GO:0070727_0.694\|GO:0008104_0.693\|GO:0022607_0.692\|GO:0046907_0.692\|GO:0016192_0.688\|GO:0030030_0.687\|GO:0120036_0.687\|GO:0007010_0.686\|GO:0007017_0.682\|GO:0007018_0.679\|GO:0033365_0.679\|GO:0048193_0.679\|GO:0051640_0.679\|GO:0051656_0.679\|GO:0070925_0.679\|GO:0000226_0.678\|GO:0030031_0.677\|GO:0120031_0.677\|GO:0010970_0.676\|GO:0030705_0.676\|GO:0051648_0.676\|GO:0099111_0.676\|GO:0031503_0.675\|GO:0051650_0.675\|GO:0001578_0.674\|GO:0005929_0.674\|GO:0006903_0.674\|GO:0030990_0.674\|GO:0032991_0.674\|GO:0035082_0.674\|GO:0035735_0.674\|GO:0042073_0.674\|GO:0042995_0.674\|GO:0044782_0.674\|GO:0048199_0.674\|GO:0060271_0.674\|GO:0061512_0.674\|GO:0097712_0.674\|GO:0098590_0.674\|GO:0120025_0.674\|GO:1905349_0.674\|GO:0035720_0.670\|GO:0043005_0.565\|GO:0140535_0.561\|GO:0030992_0.540\|GO:0032391_0.540\|GO:0035869_0.540\|GO:0097539_0.540\|GO:0097542_0.540\|GO:0097546_0.540\|GO:0097730_0.540\|GO:0097731_0.540\|GO:0097733_0.540	IPR039975+9-488+\|IPR048643+416-472+	—	PF21178+416-472+Intraflagellar_transport_protein_52,_C-terminal_domain	—	PTHR12969+9-488+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	158-201	2.000	1-157;202-534	5fms_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.700	60409.280	4.591	-24.000	29.775	10.674	49.813	50.187	13.109	16.667	46.629

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	82.998	112.959	102.505	64.314	43.894	40.124	34.402	61.226	251.842	1.952	109.048

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.368	-0.950	-0.565	-0.586	—	—	—	-0.687	6.242	—	—	—	—

No JSON data available for plots.

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