Hg_chrom2_TN10mRNA_3704
Organism: Heterodera glycines Gene Locus: chr2:7997481-8001779 Feature type: polypeptideProtein Sequence
Length: 1,134
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.851 | 1.107 | 0.722 | 0.699 | 1.734 | 1.696 | 0.693 | 1.058 | 0.901 | 1.382 | 1.149 | 1.297 | 0.955 | 0.695 | 1.746 | 1.247 | 0.651 | 0.441 | 0.678 | 0.233 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3519
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KREETDRKAKKRDGR,KRRKDAEEQRTKRLKD,RKAKKRDGRGGRTHGRTQ,KRRRAEDIDQSSENKLRRA,RKESTCESGRKAEEERQKR,KRIEENKQQREEAEKRRKD,RKESELADKQKLLDKIQRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.397
|
0.124
|
0.019
|
0.613
|
0.200
|
0.084
|
0.164
|
0.034
|
0.129
|
0.131
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003374
|
2.000
|
1.000
|
Hsc_gene_4788.t1
|
— | — | — |
KAI1721735.1 S phase cyclin a-associated protein in the endoplasmic reticulum domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR31434+10-207+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-439;518-593;794-850
|
3.000
|
440-517;594-793;851-1134
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
128811.620
|
8.972
|
32.000
|
32.628
|
7.231
|
56.702
|
43.298
|
18.254
|
14.374
|
43.122
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
166.544
|
135.902
|
120.392
|
84.058
|
67.311
|
68.008
|
234.634
|
237.086
|
158.552
|
254.446
|
213.349
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.404
|
-0.830
|
-0.409
|
-0.350
|
— |
1.797
|
1.695
|
— | — | — | — | — | — |
No JSON data available for plots.