Hg_chrom2_TN10mRNA_3705
Organism: Heterodera glycines Gene Locus: chr2:8002193-8004070 Feature type: polypeptideProtein Sequence
Length: 299
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.7 | 0.365 | 0.923 | 0.334 | 0.943 | 0.478 | 0.334 | 1.561 | 1.898 | 0.76 | 1.377 | 1.672 | 1.351 | 1.297 | 1.672 | 0.548 | 1.013 | 2.058 | 0.59 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3520
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— |
RRLFWSFTSSKFRPR
|
77-125
|
0.994
|
5-42
|
0.984
|
— | — |
0.000
|
— | — |
0.143
|
0.248
|
0.059
|
0.181
|
0.206
|
0.146
|
0.534
|
0.201
|
0.161
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003375
|
2.000
|
1.000
|
Hsc_gene_4789.t1
|
— | — |
Q6YC49.1 UDP-N-acetylglucosamine transporter [Bos taurus]
|
KAI6174337.1 UDP-galactose translocator [Aphelenchoides besseyi];KAI6211053.1 UDP-galactose translocator [Aphelenchoides besseyi]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000139|GO:0015165|GO:0016020|GO:0090481
|
GO:0005575_0.886|GO:0110165_0.884|GO:0016020_0.861|GO:0008150_0.837|GO:0009987_0.795|GO:0005886_0.788|GO:0071944_0.788|GO:0005622_0.786|GO:0043226_0.764|GO:0043229_0.759|GO:0043227_0.739|GO:0043231_0.736|GO:0005737_0.728|GO:0051179_0.698|GO:0051234_0.695|GO:0006810_0.689|GO:0005773_0.664|GO:0012505_0.643|GO:0055085_0.607|GO:0003674_0.605|GO:0071705_0.598|GO:0015711_0.563|GO:0015748_0.556|GO:0015780_0.556|GO:0015931_0.556|GO:0090481_0.556|GO:1901264_0.556|GO:0005794_0.521
|
IPR007271+19-269_26-269+
|
— |
PF04142+19-269+Nucleotide-sugar_transporter
|
— |
PTHR10231+26-269+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-299
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.725
|
33474.840
|
10.815
|
23.000
|
16.054
|
11.371
|
37.793
|
62.207
|
12.040
|
4.013
|
48.161
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
14.732
|
0.761
|
1.597
|
0.618
|
1.387
|
1.009
|
2.942
|
6.185
|
73.150
|
4.152
|
33.722
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2.510
|
— | — |
-6.682
|
— | — | — |
No JSON data available for plots.