Hg_chrom2_TN10mRNA_3707
Organism: Heterodera glycines Gene Locus: chr2:8008928-8011600 Feature type: polypeptideProtein Sequence
Length: 452
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.772 | 0.875 | 0.684 | 1.068 | 1.069 | 1.021 | 1.027 | 1.106 | 1.082 | 1.076 | 0.503 | 1.171 | 1.536 | 1.404 | 1.941 | 1.296 | 0.798 | 0.536 | 0.681 | 0.781 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3522
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
5-27
|
1.000
|
— | — |
0.000
|
— | — |
0.430
|
0.266
|
0.003
|
0.590
|
0.201
|
0.176
|
0.155
|
0.039
|
0.090
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003377
|
2.000
|
1.000
|
Hsc_gene_4791.t1
|
— | — | — |
KAH7718476.1 Kelch motif family protein [Aphelenchus avenae]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.943|GO:0005575_0.894|GO:0110165_0.885|GO:0009987_0.883|GO:0005622_0.810|GO:0032991_0.612|GO:0003674_0.567|GO:0016020_0.565|GO:1902494_0.556|GO:0140535_0.547|GO:1990234_0.546|GO:0000151_0.540|GO:0031461_0.540|GO:0031462_0.540|GO:0043226_0.527|GO:0008152_0.504
|
IPR015915+4-334_37-304+|IPR052125+29-300+
|
— |
PF13854+39-70+Kelch_motif
|
— |
PTHR46428+29-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
141-193
|
2.000
|
1-140;194-452
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.948
|
50488.250
|
8.918
|
17.000
|
25.221
|
11.283
|
46.903
|
53.097
|
15.044
|
10.177
|
50.664
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
174.769
|
43.168
|
71.054
|
55.820
|
60.390
|
65.831
|
203.569
|
287.317
|
92.071
|
400.383
|
268.249
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.489
|
— | — | — | — |
1.640
|
2.023
|
-0.355
|
— | — | — | — | — |
No JSON data available for plots.