Hg_chrom2_TN10mRNA_3708
Organism: Heterodera glycines Gene Locus: chr2:8012039-8015591 Feature type: polypeptideProtein Sequence
Length: 706
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 1.153 | 0.67 | 0.537 | 1.133 | 1.09 | 0.826 | 0.992 | 1.731 | 1.302 | 0.88 | 1.25 | 1.338 | 0.926 | 1.272 | 1.052 | 0.581 | 1.073 | 1.09 | 0.667 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3523
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.372
|
0.164
|
0.075
|
0.665
|
0.374
|
0.254
|
0.175
|
0.023
|
0.149
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007019
|
1.000
|
1.000
|
Hsc_gene_4793.t1
|
Hsc_gene_4793.t1
|
— |
Q7ZWB7.1 Bardet-Biedl syndrome 5 protein homolog [Danio rerio]
|
KAH7731478.1 Bardet-Biedl syndrome 5-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491|GO:0034464
|
GO:0005575_0.781|GO:0110165_0.772|GO:0005622_0.702|GO:0008150_0.670|GO:0016020_0.618|GO:0005737_0.599|GO:0009987_0.578|GO:0043226_0.550|GO:0043227_0.515
|
IPR006606+373-691_375-693+|IPR011032+6-140+|IPR013154+42-104+|IPR014003+396-450_531-585+|IPR020843+15-313+|IPR036291+108-199+
|
SM00683+396-450_531-585+|SM00829+15-313+
|
PF07289+375-693+Bardet-Biedl_syndrome_5_protein|PF08240+42-104+Alcohol_dehydrogenase_GroES-like_domain
|
— |
PTHR21351+373-691+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-706
|
6voa_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
79183.450
|
8.987
|
18.000
|
24.504
|
10.482
|
44.618
|
55.382
|
14.023
|
10.482
|
46.884
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
218.349
|
966.783
|
215.472
|
95.760
|
33.136
|
23.143
|
37.035
|
141.534
|
168.105
|
261.874
|
221.687
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.397
|
-3.473
|
-1.060
|
-1.565
|
— |
0.690
|
2.508
|
-1.791
|
— | — | — | — | — |
No JSON data available for plots.