Hg_chrom2_TN10mRNA_3709
Organism: Heterodera glycines Gene Locus: chr2:8015755-8017348 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.054 | 0.831 | 0.599 | 0.568 | 1.465 | 0.634 | 1.112 | 0.687 | 0.794 | 1.374 | 1.124 | 2.101 | 1.908 | 1.004 | 1.177 | 0.549 | 0.721 | 1.041 | 1.268 | 0.323 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3524
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— |
KKSFIQLEFDKENDKRKLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.356
|
0.386
|
0.037
|
0.236
|
0.090
|
0.029
|
0.028
|
0.506
|
0.066
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007020
|
1.000
|
1.000
|
Hsc_gene_4794.t1
|
Hsc_gene_4794.t1
|
— |
Q09618.3 CaiB/baiF CoA-transferase family protein ZK892.4 [Caenorhabditis elegans]
|
KAI1730505.1 coA-transferase family III domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0008150_0.806|GO:0003674_0.731|GO:0009987_0.690|GO:0005575_0.682|GO:0110165_0.681|GO:0008152_0.611|GO:0003824_0.596|GO:0016020_0.595|GO:0005622_0.559|GO:0044237_0.526|GO:0005737_0.515|GO:0043226_0.504
|
IPR003673+6-343+|IPR023606+3-224_5-338+|IPR044855+225-302+|IPR050509+5-353+
|
— |
PF02515+6-343+CoA-transferase_family_III
|
— |
PTHR48228+5-353+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
326-364
|
1.000
|
1-325
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
40471.020
|
8.478
|
6.500
|
26.648
|
10.989
|
40.934
|
59.066
|
14.560
|
12.088
|
47.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
lightgreen
|
99.300
|
53.567
|
131.274
|
83.386
|
59.084
|
69.072
|
78.941
|
161.210
|
143.398
|
88.190
|
111.851
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.066
|
0.501
|
-0.547
|
-0.530
|
— | — |
1.116
|
-0.887
|
— | — | — | — | — |
No JSON data available for plots.