Hg_chrom2_TN10mRNA_3710
Organism: Heterodera glycines Gene Locus: chr2:8019606-8020714 Feature type: polypeptideProtein Sequence
Length: 171
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.748 | 1.36 | 1.063 | 0.202 | 0.682 | 0.75 | 0.696 | 1.17 | 1.3 | 1.818 | 0.886 | 1.376 | 0.975 | 0.675 | 0.835 | 1.086 | 1.534 | 0.797 | 1.799 | 0.86 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3525
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.191
|
0.255
|
0.015
|
0.434
|
0.093
|
0.140
|
0.303
|
0.013
|
0.314
|
0.177
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003378
|
2.000
|
1.000
|
Hsc_gene_4796.t1
|
Hsc_gene_4796.t1
|
— |
Q5M9P8.1 ADP-ribosylation factor-like protein 6 [Danio rerio]
|
KAI1729080.1 ADP-ribosylation factor family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.814|GO:0110165_0.800|GO:0008150_0.771|GO:0005622_0.732|GO:0016020_0.729|GO:0009987_0.681|GO:0043226_0.675|GO:0043227_0.651|GO:0005737_0.645|GO:0003674_0.604|GO:0071944_0.595|GO:0043229_0.591|GO:0005886_0.588|GO:0051179_0.532|GO:0043231_0.510
|
IPR006689+1-162_24-162_30-54_57-82_136-160+|IPR024156+24-163+|IPR027417+12-166_27-165+
|
SM00177+1-166+|SM00178+1-162+
|
PF00025+24-162+ADP-ribosylation_factor_family
|
G3DSA:3.40.50.300:FF:001166+15-165+ADP-ribosylation_factor_D
|
PTHR11711+24-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-171
|
2h57_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
19160.960
|
7.356
|
2.000
|
22.222
|
11.111
|
47.953
|
52.047
|
12.281
|
9.942
|
50.292
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
12.840
|
11.455
|
6.852
|
2.859
|
1.079
|
1.869
|
12.071
|
28.928
|
14.679
|
20.750
|
18.148
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.978
|
-2.138
|
-1.145
|
— | — |
2.704
|
3.845
|
-1.117
|
— | — | — | — | — |
No JSON data available for plots.