Hg_chrom2_TN10mRNA_3711
Organism: Heterodera glycines Gene Locus: chr2:8021394-8022172 Feature type: polypeptideProtein Sequence
Length: 126
(Signal peptide: 1-31)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.015 | 1.846 | 0.866 | 0.547 | 0.661 | 1.832 | 0.378 | 0.794 | 1.587 | 1.394 | 1.203 | 0.934 | 1.543 | 0.305 | 1.134 | 1.361 | 0.651 | 0.842 | 1.221 | 0.233 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3526
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_4797
|
— |
4-Egg_Male
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-31
|
0.784
|
0.536
|
0.000
|
0.000
|
0.257
|
0.389
|
0.113
|
0.291
|
0.092
|
0.042
|
0.047
|
0.024
|
0.141
|
0.733
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001852
|
3.000
|
1.000
|
Hsc_gene_4797.t1
|
Hsc_gene_4797.t1
|
— |
O19093.1 Cystatin-C [Saimiri sciureus]
|
KAI1719396.1 cystatin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004869
|
GO:0005575_0.775|GO:0110165_0.773|GO:0008150_0.588|GO:0003674_0.547|GO:0005488_0.533|GO:0005515_0.523|GO:0016020_0.515
|
IPR000010+36-125_39-115_39-123+|IPR046350+38-119+
|
SM00043+36-125+
|
PF00031+39-123+Cystatin_domain
|
— |
PTHR46186+20-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-126
|
4it7_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
14270.380
|
10.295
|
7.000
|
23.810
|
9.524
|
52.381
|
47.619
|
15.079
|
8.730
|
46.825
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1061.582
|
435.981
|
309.729
|
349.860
|
211.930
|
163.064
|
325.204
|
788.510
|
1822.421
|
2308.501
|
2100.181
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.722
|
-0.455
|
0.284
|
-0.756
|
-0.363
|
1.007
|
2.176
|
-1.137
|
— |
-2.235
|
-3.373
|
— | — |