Hg_chrom2_TN10mRNA_3714
Organism: Heterodera glycines Gene Locus: chr2:8033477-8035806 Feature type: polypeptideProtein Sequence
Length: 420
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.748 | 1.274 | 0.996 | 0.821 | 1.19 | 1.343 | 0.992 | 1.905 | 1.429 | 0.933 | 0.613 | 0.84 | 1.786 | 0.687 | 1.312 | 0.986 | 0.937 | 0.974 | 0.366 | 0.28 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3529
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.687
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
GRKKAKAAKGRRH
|
58-78
|
0.951
|
59-104
|
0.928
|
— | — |
0.000
|
— | — |
0.192
|
0.309
|
0.029
|
0.342
|
0.136
|
0.064
|
0.088
|
0.006
|
0.177
|
0.862
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003381
|
2.000
|
1.000
|
Hsc_gene_4801.t1
|
— | — | — |
KAI1729506.1 von willebrand factor type A domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.809|GO:0110165_0.801|GO:0008150_0.605|GO:0071944_0.550
|
IPR002035+18-204_20-194_20-200+|IPR036465+15-206_18-205+|IPR051962+280-359+
|
SM00327+18-204+
|
PF00092+20-194+von_Willebrand_factor_type_A_domain
|
— |
PTHR22907+280-359+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
389-420
|
1.000
|
1-388
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
46727.490
|
6.399
|
-1.000
|
26.905
|
11.667
|
50.238
|
49.762
|
14.286
|
12.619
|
50.714
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
57.759
|
7.141
|
2.690
|
6.012
|
2.647
|
39.161
|
14.840
|
93.573
|
56.839
|
147.793
|
108.813
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.642
|
— |
1.273
|
— |
3.903
|
-1.386
|
1.137
|
-2.504
|
— | — |
-5.169
|
— | — |
No JSON data available for plots.