SCN Proteipedia

Hg_chrom2_TN10mRNA_3715

Organism: Heterodera glycines Gene Locus: chr2:8036716-8038223 Feature type: polypeptide

Protein Sequence

Length: 286

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.813	0.813	1.399	0.241	1.748	1.076	0.416	0.874	1.865	1.276	0.954	1.851	1.457	1.076	0.928	0.949	0.917	0.53	0.807	0.514	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3530	—	—	1.889	2.000	2.000	1.000	2.000	2.000	2.000	2.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	0.987

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	KKYIFGNNRKKQLKK	—	—	—	—	—	—	0.000	—	—	0.500	0.277	0.053	0.598	0.219	0.247	0.195	0.047	0.078	0.081

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003382	1.000	2.000	Hsc_gene_23649.t1;Hsc_gene_23649.t2	Hsc_gene_4783.t1	—	Q62559.2 Intraflagellar transport protein 52 homolog [Mus musculus]	KAH7729956.1 intraflagellar transport protein 52 [Aphelenchus avenae]	No	-0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.931\|GO:0005575_0.903\|GO:0110165_0.900\|GO:0005622_0.878\|GO:0009987_0.873\|GO:0043226_0.823\|GO:0016020_0.820\|GO:0071840_0.769\|GO:0043227_0.765\|GO:0016043_0.757\|GO:0051179_0.745\|GO:0051234_0.737\|GO:0006810_0.734\|GO:0006996_0.722\|GO:0051641_0.720\|GO:0051649_0.712\|GO:0044085_0.709\|GO:0046907_0.702\|GO:0008104_0.700\|GO:0033036_0.700\|GO:0070727_0.700\|GO:0022607_0.698\|GO:0016192_0.693\|GO:0007010_0.692\|GO:0071944_0.692\|GO:0007017_0.686\|GO:0030030_0.686\|GO:0120036_0.685\|GO:0032991_0.684\|GO:0051640_0.684\|GO:0051656_0.684\|GO:0033365_0.683\|GO:0048193_0.683\|GO:0000226_0.682\|GO:0007018_0.682\|GO:0070925_0.682\|GO:0005886_0.681\|GO:0030031_0.679\|GO:0030705_0.679\|GO:0051648_0.678\|GO:0120031_0.678\|GO:0010970_0.677\|GO:0031503_0.677\|GO:0051650_0.677\|GO:0099111_0.677\|GO:0001578_0.676\|GO:0005929_0.676\|GO:0006903_0.676\|GO:0030990_0.676\|GO:0035082_0.676\|GO:0035735_0.676\|GO:0042073_0.676\|GO:0042995_0.676\|GO:0044782_0.676\|GO:0048199_0.676\|GO:0060271_0.676\|GO:0061512_0.676\|GO:0097712_0.676\|GO:0098590_0.676\|GO:0120025_0.676\|GO:1905349_0.676\|GO:0035720_0.670\|GO:0140535_0.575\|GO:0043005_0.561\|GO:0030992_0.540\|GO:0032391_0.540\|GO:0035869_0.540\|GO:0097539_0.540\|GO:0097542_0.540\|GO:0097546_0.540\|GO:0097730_0.540\|GO:0097731_0.540\|GO:0097733_0.540	IPR039975+24-240+\|IPR048643+168-224+	—	PF21178+168-224+Intraflagellar_transport_protein_52,_C-terminal_domain	—	PTHR12969+24-240+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-286	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.863	32675.080	4.376	-18.500	30.769	9.790	50.699	49.301	12.587	18.182	43.706

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	52.685	75.945	74.328	39.611	91.663	79.649	27.090	43.929	19.268	53.965	39.095

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.076	-0.796	1.175	—	-1.543	-0.960	—	—	—	—	—	—

No JSON data available for plots.

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