Hg_chrom2_TN10mRNA_3716
Organism: Heterodera glycines Gene Locus: chr2:8056550-8057451 Feature type: polypeptideProtein Sequence
Length: 217
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.34 | 0.857 | 1.424 | 0.477 | 1.152 | 0.827 | 0.384 | 1.152 | 0.819 | 1.495 | 1.466 | 0.813 | 0.768 | 0.886 | 1.129 | 0.856 | 0.755 | 0.978 | 0.709 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3531
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.873
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|nucleus
|
— | — |
53-84
|
0.967
|
— | — | — | — |
0.000
|
— | — |
0.555
|
0.269
|
0.189
|
0.570
|
0.110
|
0.075
|
0.140
|
0.354
|
0.141
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003373
|
2.000
|
1.000
|
Hsc_gene_4787.t1
|
Hsc_gene_4787.t1
|
— |
Q28C98.1 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 [Xenopus tropicalis]
|
KAI1711568.1 HD domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.919|GO:0009987_0.709|GO:0003674_0.696|GO:0005575_0.668|GO:0008152_0.652|GO:0110165_0.651|GO:0003824_0.585|GO:0044238_0.561|GO:0005622_0.556|GO:0044237_0.538|GO:0006139_0.522|GO:0050896_0.515|GO:0005737_0.510
|
IPR003607+69-184+|IPR006674+70-165+|IPR052194+45-212+
|
— |
PF13328+50-171+HD_domain
|
G3DSA:1.10.3210.10:FF:000012+42-215+HD_domain_containing_3
|
PTHR46246+45-212+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-217
|
3nr1_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
24372.850
|
7.811
|
3.500
|
32.258
|
9.217
|
49.770
|
50.230
|
17.512
|
14.747
|
49.309
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1021.461
|
694.756
|
863.405
|
766.567
|
889.943
|
952.049
|
1133.606
|
1685.217
|
842.167
|
1217.687
|
1056.750
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.183
|
— |
0.264
|
0.720
|
-0.428
|
— | — | — | — | — |
No JSON data available for plots.