Hg_chrom2_TN10mRNA_3718
Organism: Heterodera glycines Gene Locus: chr2:8063611-8065617 Feature type: polypeptideProtein Sequence
Length: 355
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 1.114 | 0.512 | 0.68 | 0.469 | 1.083 | 0.537 | 0.141 | 1.315 | 1.979 | 0.854 | 1.823 | 2.034 | 0.921 | 0.632 | 0.966 | 0.877 | 1.366 | 1.3 | 0.994 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3533
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.699
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
golgi_apparatus
|
— | — |
15-42
|
0.952
|
5-42
|
0.984
|
— | — |
0.000
|
— | — |
0.099
|
0.164
|
0.028
|
0.074
|
0.385
|
0.323
|
0.767
|
0.078
|
0.269
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003375
|
2.000
|
1.000
|
Hsc_gene_4789.t1
|
Hsc_gene_4789.t1;Hsc_gene_4789.t2
|
— |
Q93890.5 UDP-galactose/UDP-N-acetylglucosamine transporter srf-3 [Caenorhabditis elegans]
|
KAI6197777.1 UDP-galactose translocator [Aphelenchoides besseyi]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000139|GO:0015165|GO:0016020|GO:0090481
|
GO:0005575_0.852|GO:0110165_0.852|GO:0016020_0.812|GO:0071944_0.811|GO:0005886_0.805|GO:0008150_0.800|GO:0009987_0.754|GO:0005622_0.712|GO:0005737_0.712|GO:0006810_0.705|GO:0051179_0.705|GO:0051234_0.705|GO:0043226_0.683|GO:0043229_0.670|GO:0005773_0.661|GO:0043227_0.661|GO:0043231_0.661|GO:0055085_0.655|GO:0012505_0.634|GO:0003674_0.617|GO:0071705_0.542|GO:0015711_0.529|GO:1901264_0.523|GO:0005215_0.522|GO:0022857_0.522
|
IPR007271+4-354_19-321_26-330+
|
— |
PF04142+19-321+Nucleotide-sugar_transporter
|
— |
PTHR10231+26-330+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
353-355
|
1.000
|
1-352
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
39805.310
|
9.534
|
11.500
|
14.648
|
12.676
|
35.775
|
64.225
|
9.014
|
5.634
|
47.887
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
94.190
|
57.259
|
135.122
|
91.627
|
199.106
|
189.351
|
34.129
|
100.154
|
32.311
|
85.317
|
62.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.007
|
0.541
|
-0.451
|
1.087
|
— |
-2.469
|
-1.027
|
-1.415
|
— | — | — | — | — |
No JSON data available for plots.