Hg_chrom2_TN10mRNA_3719
Organism: Heterodera glycines Gene Locus: chr2:8068717-8073119 Feature type: polypeptideProtein Sequence
Length: 568
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 1.269 | 0.864 | 1.153 | 1.203 | 1.354 | 0.943 | 1.056 | 1.056 | 1.213 | 0.827 | 1.139 | 1.223 | 0.846 | 1.725 | 1.031 | 0.75 | 0.534 | 0.948 | 0.725 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3534
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.457
|
0.217
|
0.003
|
0.644
|
0.156
|
0.126
|
0.144
|
0.015
|
0.168
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003377
|
2.000
|
1.000
|
Hsc_gene_4791.t1
|
Hsc_gene_4791.t1;Hsc_gene_4791.t2
|
— | — |
KAH7718476.1 Kelch motif family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.957|GO:0005575_0.917|GO:0110165_0.914|GO:0009987_0.908|GO:0005622_0.850|GO:0032991_0.645|GO:0016020_0.609|GO:0003674_0.582|GO:0043226_0.580|GO:1902494_0.563|GO:0043229_0.551|GO:0140535_0.549|GO:1990234_0.549|GO:0000151_0.540|GO:0031461_0.540|GO:0031462_0.540|GO:0005488_0.530|GO:0043227_0.516|GO:0043231_0.509|GO:0008152_0.503|GO:0043170_0.501
|
IPR006652+425-476+|IPR015915+112-352_156-419_360-541_421-523+|IPR052125+118-540+
|
— |
PF01344+425-476+Kelch_motif|PF13964+160-206+Kelch_motif
|
— |
PTHR46428+118-540+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
63-126;268-312
|
3.000
|
1-62;127-267;313-568
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.868
|
64219.690
|
8.517
|
17.000
|
27.993
|
10.211
|
50.528
|
49.472
|
16.021
|
11.972
|
47.711
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1010.065
|
513.776
|
1241.487
|
744.778
|
796.492
|
792.510
|
879.536
|
1495.759
|
548.128
|
1583.811
|
1139.947
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.044
|
0.399
|
-0.629
|
— | — | — |
0.813
|
-0.623
|
— | — | — | — | — |
No JSON data available for plots.