Hg_chrom2_TN10mRNA_3720
Organism: Heterodera glycines Gene Locus: chr2:8073644-8074979 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.001 | 1.078 | 0.722 | 0.571 | 1.104 | 0.764 | 1.261 | 0.828 | 1.545 | 1.342 | 1.003 | 1.558 | 1.196 | 0.891 | 0.946 | 1.135 | 0.434 | 1.054 | 0.509 | 0.39 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3535
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.318
|
0.383
|
0.094
|
0.604
|
0.300
|
0.182
|
0.092
|
0.028
|
0.198
|
0.261
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007021
|
1.000
|
1.000
|
Hsc_gene_4792.t1
|
Hsc_gene_4792.t1
|
— |
Q9XXC8.1 Enoyl-[acyl-carrier-protein] reductase, mitochondrial [Caenorhabditis elegans]
|
KAH7729502.1 Protein Y48A6B.9 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.729|GO:0005575_0.680|GO:0110165_0.674|GO:0005622_0.594|GO:0009987_0.579|GO:0003674_0.569|GO:0005737_0.569|GO:0016020_0.536|GO:0008152_0.508
|
IPR011032+22-123+|IPR013154+7-87+|IPR020843+2-295+|IPR036291+91-264+|IPR051034+21-288+
|
SM00829+2-295+
|
PF08240+7-87+Alcohol_dehydrogenase_GroES-like_domain
|
— |
PTHR43981+21-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-302
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
32456.470
|
8.043
|
4.500
|
23.510
|
7.947
|
41.722
|
58.278
|
12.914
|
10.596
|
51.656
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
465.265
|
3501.263
|
107.181
|
53.690
|
22.130
|
11.774
|
32.854
|
29.566
|
141.584
|
519.925
|
357.779
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.259
|
-6.163
|
-0.888
|
-1.307
|
-0.898
|
1.492
|
1.221
|
— | — | — |
-4.340
|
— | — |
No JSON data available for plots.