Hg_chrom2_TN10mRNA_3721
Organism: Heterodera glycines Gene Locus: chr2:8075110-8080778 Feature type: polypeptideProtein Sequence
Length: 1,151
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.697 | 1.313 | 0.806 | 0.659 | 1.419 | 1.002 | 0.858 | 0.825 | 1.216 | 1.315 | 0.842 | 1.431 | 1.81 | 0.752 | 1.312 | 1.129 | 0.755 | 0.711 | 1.27 | 0.537 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3536
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKSFIQLEFDKENDKRKLR,SSSRKRRNCGGEKRNDRRRRRESGDDGTGRGKA
|
52-72
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.463
|
0.139
|
0.012
|
0.453
|
0.199
|
0.097
|
0.194
|
0.310
|
0.263
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_4793.t1;Hsc_gene_4794.t1;Hsc_gene_4795.t1;Hsc_gene_4795.t2
|
— |
Q7ZWB7.1 Bardet-Biedl syndrome 5 protein homolog [Danio rerio]
|
KAI1721256.1 bardet-Biedl syndrome 5 protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0034464
|
GO:0005575_0.823|GO:0110165_0.820|GO:0005622_0.723|GO:0008150_0.719|GO:0016020_0.689|GO:0009987_0.636|GO:0043226_0.626|GO:0043227_0.565|GO:0003674_0.553|GO:0005737_0.545|GO:0043229_0.544
|
IPR003673+427-715+|IPR006606+10-363_12-356+|IPR014003+33-87_168-222+|IPR023606+426-716_427-642+|IPR044855+643-717+
|
SM00683+33-87_168-222+
|
PF02515+427-715+CoA-transferase_family_III|PF07289+12-356+Bardet-Biedl_syndrome_5_protein
|
— |
PTHR21351+10-363+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
803-857;1029-1151
|
2.000
|
1-802;858-1028
|
6voa_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
130484.360
|
6.399
|
-1.500
|
26.586
|
11.642
|
48.653
|
51.347
|
13.640
|
12.945
|
46.308
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
873.157
|
917.370
|
1489.891
|
940.026
|
529.163
|
498.090
|
337.868
|
986.884
|
899.967
|
1007.851
|
961.615
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.469
|
— |
-0.555
|
-0.861
|
— |
-0.549
|
0.881
|
-1.404
|
— | — | — | — | — |
No JSON data available for plots.