Hg_chrom2_TN10mRNA_3722
Organism: Heterodera glycines Gene Locus: chr2:8081132-8082490 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.544 | 1.088 | 0.719 | 0.372 | 0.48 | 0.738 | 0.514 | 1.079 | 1.039 | 2.333 | 0.818 | 1.693 | 2.098 | 1.245 | 0.661 | 1.182 | 1.415 | 0.872 | 1.107 | 0.529 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3537
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— | — |
25-56
|
0.997
|
7-33
|
0.998
|
— | — |
0.000
|
— | — |
0.356
|
0.129
|
0.058
|
0.406
|
0.442
|
0.482
|
0.483
|
0.021
|
0.182
|
0.187
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003378
|
2.000
|
1.000
|
Hsc_gene_4796.t1
|
Hsc_gene_4796.t1
|
— |
Q5M9P8.1 ADP-ribosylation factor-like protein 6 [Danio rerio]
|
KAI1729080.1 ADP-ribosylation factor family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.850|GO:0110165_0.842|GO:0016020_0.814|GO:0008150_0.796|GO:0005886_0.777|GO:0071944_0.777|GO:0009987_0.718|GO:0005622_0.696|GO:0043226_0.674|GO:0043227_0.662|GO:0051179_0.633|GO:0005737_0.627|GO:0003674_0.593|GO:0043229_0.583|GO:0051234_0.571|GO:0005773_0.555|GO:0043231_0.555|GO:0006810_0.545|GO:0012505_0.516
|
IPR005225+105-234+|IPR006689+89-269_99-269_107-130_164-189_243-267+|IPR024156+94-270+|IPR027417+93-275_103-272+
|
SM00177+89-273+|SM00178+89-269+
|
PF00025+99-269+ADP-ribosylation_factor_family
|
G3DSA:3.40.50.300:FF:001166+94-272+ADP-ribosylation_factor_D
|
PTHR11711+94-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-278
|
6voa_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.834
|
31261.770
|
9.384
|
8.000
|
17.626
|
12.950
|
42.086
|
57.914
|
10.791
|
6.835
|
47.842
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
65.876
|
123.249
|
77.235
|
41.923
|
14.621
|
12.926
|
26.469
|
74.581
|
29.806
|
126.727
|
85.190
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.907
|
-1.693
|
-0.769
|
-1.552
|
— |
1.046
|
2.427
|
-1.352
|
— | — | — | — | — |
No JSON data available for plots.