Hg_chrom2_TN10mRNA_3724
Organism: Heterodera glycines Gene Locus: chr2:8082976-8083737 Feature type: polypeptideProtein Sequence
Length: 145
(Signal peptide: 1-31)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.882 | 1.604 | 0.752 | 0.476 | 1.034 | 1.945 | 0.328 | 0.69 | 1.686 | 1.398 | 1.254 | 0.811 | 1.533 | 0.265 | 0.985 | 1.281 | 0.791 | 0.836 | 1.592 | 0.406 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3538
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_4797
|
— |
4-Not_Clustered
|
0.707
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-31
|
0.784
|
0.536
|
0.000
|
0.000
|
0.221
|
0.496
|
0.081
|
0.398
|
0.104
|
0.061
|
0.069
|
0.067
|
0.067
|
0.620
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001852
|
3.000
|
1.000
|
Hsc_gene_4797.t1
|
Hsc_gene_4797.t1
|
— |
G5ECM9.1 Cystatin cpi-2 [Caenorhabditis elegans]
|
KAI1719396.1 cystatin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004869
|
GO:0005575_0.735|GO:0110165_0.731|GO:0008150_0.587|GO:0003674_0.547|GO:0005488_0.531|GO:0005515_0.524
|
IPR000010+36-145_39-127_39-139+|IPR046350+38-141+
|
SM00043+36-145+
|
PF00031+39-127+Cystatin_domain
|
G3DSA:3.10.450.10:FF:000004+33-143+Cystatin_C
|
PTHR46186+20-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-145
|
4it7_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
16637.080
|
9.583
|
5.000
|
24.828
|
10.345
|
53.103
|
46.897
|
14.483
|
10.345
|
43.448
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1234.776
|
665.868
|
587.632
|
687.756
|
409.940
|
343.371
|
602.687
|
1400.022
|
1394.521
|
2594.774
|
2080.380
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.409
|
— |
0.335
|
-0.778
|
— |
0.824
|
1.929
|
-1.075
|
— | — | — | — | — |