Hg_chrom2_TN10mRNA_3725
Organism: Heterodera glycines Gene Locus: chr2:8084116-8088751 Feature type: polypeptideProtein Sequence
Length: 549
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.017 | 0.805 | 0.563 | 0.754 | 0.546 | 0.841 | 0.911 | 1.002 | 1.457 | 1.502 | 0.359 | 1.929 | 2.226 | 0.806 | 1.004 | 1.275 | 1.045 | 0.773 | 1.401 | 1.071 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3539
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
10-50
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.057
|
0.123
|
0.034
|
0.139
|
0.354
|
0.646
|
0.549
|
0.015
|
0.594
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003379
|
2.000
|
1.000
|
Hsc_gene_4798.t1
|
Hsc_gene_4798.t1
|
— | — |
KAI1707395.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.963|GO:0009987_0.921|GO:0006810_0.905|GO:0051179_0.905|GO:0051234_0.905|GO:0055085_0.861|GO:0003674_0.849|GO:0005215_0.817|GO:0022857_0.817|GO:0071705_0.745|GO:0015711_0.705|GO:0005575_0.672|GO:0110165_0.672|GO:0008514_0.671|GO:0016020_0.648|GO:0071944_0.643|GO:0005886_0.634
|
IPR011701+69-237_325-478+|IPR036259+15-538_17-231_355-542+|IPR052983+26-536+
|
— |
PF07690+69-237_325-478+Major_Facilitator_Superfamily
|
— |
PTHR43385+26-536+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
287-348
|
2.000
|
1-286;349-549
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
60964.690
|
8.212
|
10.500
|
15.665
|
15.483
|
37.705
|
62.295
|
9.290
|
6.375
|
49.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
1451.476
|
2457.106
|
2112.728
|
1603.207
|
1281.018
|
1697.169
|
1451.331
|
1741.002
|
1013.842
|
960.990
|
983.641
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.448
|
-0.753
|
-0.289
|
-0.356
|
0.421
|
-0.217
|
— | — | — | — | — | — | — |
No JSON data available for plots.