Hg_chrom2_TN10mRNA_3726
Organism: Heterodera glycines Gene Locus: chr2:8089849-8092797 Feature type: polypeptideProtein Sequence
Length: 495
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.681 | 1.128 | 0.735 | 0.975 | 0.539 | 0.777 | 0.361 | 1.111 | 2.02 | 1.447 | 0.551 | 1.07 | 1.684 | 0.894 | 1.608 | 1.385 | 1.159 | 0.735 | 1.088 | 1.188 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3540
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — |
0.812
|
0.040
|
6.000
|
— |
0.115
|
0.050
|
0.031
|
0.120
|
0.374
|
0.158
|
0.095
|
0.020
|
0.819
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003380
|
2.000
|
1.000
|
Hsc_gene_4799.t1
|
Hsc_gene_4799.t1
|
— |
Q10904.2 Probable G-protein coupled receptor AH9.1 [Caenorhabditis elegans]
|
KAF7633147.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.968|GO:0065007_0.896|GO:0009987_0.848|GO:0050789_0.804|GO:0050794_0.780|GO:0050896_0.766|GO:0051716_0.747|GO:0007154_0.741|GO:0023052_0.741|GO:0005575_0.712|GO:0110165_0.712|GO:0007165_0.704|GO:0003674_0.677|GO:0016020_0.671|GO:0071944_0.661|GO:0005886_0.656|GO:0007186_0.656|GO:0005488_0.503
|
IPR000276+63-87_82-352_96-117_143-165_290-314_329-355+|IPR017452+78-347+|IPR053093+51-456+
|
— |
PF00001+82-352+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR47760+51-456+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
378-495
|
1.000
|
1-377
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
56898.060
|
9.683
|
26.500
|
21.010
|
13.737
|
45.657
|
54.343
|
13.737
|
7.273
|
46.869
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
200.194
|
134.427
|
237.840
|
154.843
|
56.675
|
102.491
|
222.135
|
209.781
|
97.406
|
383.474
|
260.873
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
— |
-0.511
|
-1.480
|
0.868
|
1.127
|
0.933
|
— | — | — | — | — | — |