Hg_chrom2_TN10mRNA_3729
Organism: Heterodera glycines Gene Locus: chr2:8094902-8099227 Feature type: polypeptideProtein Sequence
Length: 886
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.696 | 1.207 | 1.026 | 0.778 | 1.242 | 0.897 | 0.82 | 1.58 | 1.254 | 1.113 | 0.667 | 0.996 | 1.442 | 1.02 | 1.428 | 1.064 | 0.87 | 1.18 | 0.608 | 0.332 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3543
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.573
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
PKKRQRRRRDVGTR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.191
|
0.099
|
0.034
|
0.234
|
0.223
|
0.138
|
0.226
|
0.029
|
0.382
|
0.659
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003381
|
2.000
|
1.000
|
Hsc_gene_4801.t1
|
Hsc_gene_4801.t1
|
— |
P05099.2 Cartilage matrix protein [Gallus gallus]
|
KAI1729506.1 von willebrand factor type A domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.906|GO:0110165_0.902|GO:0071944_0.721|GO:0008150_0.615|GO:0030312_0.501
|
IPR001507+552-800_552-804+|IPR002035+151-322_153-321_153-328_347-532_349-522_349-528+|IPR036465+131-325_151-335_325-533_347-533+|IPR051962+494-827+
|
SM00241+552-804+|SM00327+151-322_347-532+
|
PF00092+153-321_349-522+von_Willebrand_factor_type_A_domain
|
— |
PTHR22907+494-827+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-86;817-886
|
1.000
|
87-816
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
98842.990
|
6.449
|
-1.000
|
27.652
|
10.271
|
49.097
|
50.903
|
14.560
|
13.093
|
51.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
407.141
|
130.241
|
44.774
|
59.687
|
39.748
|
447.464
|
61.788
|
477.846
|
469.307
|
956.182
|
747.522
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.771
|
-1.263
|
0.525
|
-0.618
|
3.506
|
-2.845
|
— |
-2.801
|
— |
-2.783
|
-4.133
|
— | — |
No JSON data available for plots.