Hg_chrom2_TN10mRNA_3730
Organism: Heterodera glycines Gene Locus: chr2:8100084-8101389 Feature type: polypeptideProtein Sequence
Length: 228
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.714 | 1.326 | 0.478 | 0.302 | 1.243 | 0.787 | 0.365 | 1.535 | 1.17 | 1.067 | 1.13 | 1.29 | 2.437 | 1.012 | 1.701 | 1.253 | 0.575 | 0.797 | 0.337 | 1.419 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3544
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.904
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKRK,RRKR
|
2-23
|
0.997
|
15-55
|
1.000
|
— | — |
0.000
|
— | — |
0.144
|
0.931
|
0.029
|
0.196
|
0.077
|
0.019
|
0.051
|
0.024
|
0.038
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007023
|
1.000
|
1.000
|
Hsc_gene_4802.t1
|
Hsc_gene_4802.t1
|
— |
Q5KWZ8.1 Chaperone protein DnaJ [Geobacillus kaustophilus HTA426]
|
KAI3413661.1 DnaJ sub A member 3, mitochondrial [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.870|GO:0110165_0.869|GO:0005622_0.798|GO:0008150_0.772|GO:0016020_0.765|GO:0043226_0.723|GO:0043229_0.698|GO:0009987_0.677|GO:0005737_0.671|GO:0043227_0.655|GO:0043231_0.643|GO:0003674_0.564|GO:0005488_0.504
|
IPR001623+55-115_56-123_57-112_57-120_58-76_76-91_95-115+|IPR036869+43-145_52-126+|IPR051938+42-195+
|
SM00271+55-115+
|
PF00226+57-120+DnaJ_domain
|
— |
PTHR44145+42-195+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-228
|
2dn9_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
26871.850
|
10.231
|
16.500
|
28.947
|
17.105
|
50.000
|
50.000
|
18.860
|
10.088
|
41.228
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
448.683
|
222.542
|
230.788
|
274.052
|
369.494
|
255.778
|
294.191
|
185.546
|
401.687
|
974.577
|
729.052
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.356
|
0.399
|
-0.516
|
— |
-0.565
|
0.804
|
— | — | — | — | — |
No JSON data available for plots.