SCN Proteipedia

Hg_chrom2_TN10mRNA_3731

Organism: Heterodera glycines Gene Locus: chr2:8103322-8109246 Feature type: polypeptide

Protein Sequence

Length: 940

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.73	1.039	1.044	0.11	1.117	1.446	1.127	1.383	1.04	1.021	0.58	0.876	1.271	1.248	1.411	1.018	0.907	1.096	0.573	0.72	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3545	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	SKKRVEKRERQRRK,KKRVEKRERQRRKQV	—	—	—	—	—	—	0.000	—	—	0.202	0.157	0.040	0.579	0.312	0.308	0.273	0.004	0.643	0.055

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007024	1.000	1.000	Hsc_gene_4803.t1	Hsc_gene_4803.t1	—	G5ECY0.1 Disks large homolog 1 [Caenorhabditis elegans]	KAI1712128.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.867\|GO:0005575_0.855\|GO:0110165_0.835\|GO:0003674_0.805\|GO:0009987_0.748\|GO:0016020_0.701\|GO:0005622_0.689\|GO:0005488_0.646\|GO:0071944_0.597\|GO:0005515_0.579\|GO:0065007_0.574\|GO:0043226_0.570\|GO:0005886_0.568\|GO:0032502_0.535\|GO:0048856_0.535\|GO:0005737_0.532\|GO:0050789_0.521	IPR001452+586-657_589-656+\|IPR001478+182-265_184-268_185-265_192-268_322-411_324-416_328-410_337-416_454-536_456-537_459-535_464-539+\|IPR004172+4-64+\|IPR008144+749-924+\|IPR008145+748-927_749-925+\|IPR015143+7-64+\|IPR020590+781-798+\|IPR027417+743-928_748-936+\|IPR036028+583-772+\|IPR036034+161-279_168-273_309-414_315-418_440-545_452-572+\|IPR036892+5-62+\|IPR050614+210-900+	SM00072+748-927+\|SM00228+192-268_337-416_464-539+\|SM00326+589-656+	PF00595+185-265_328-410_459-535+PDZ_domain\|PF00625+749-925+Guanylate_kinase\|PF09058+7-64+L27_1	—	PTHR23119+210-900+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-6;67-180;269-325;547-737;938-940	4.000	7-66;181-268;326-546;738-937	1jxo_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.759	103855.170	6.330	-3.000	25.957	10.532	48.723	51.277	13.511	12.447	52.660

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	3813.568	6594.900	4611.157	2963.168	3039.950	4346.323	3664.991	6595.600	3873.793	1847.981	2716.186

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.745	-1.291	-0.530	—	0.531	-0.235	—	-0.709	—	—	—	—	—

No JSON data available for plots.

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