Hg_chrom2_TN10mRNA_3732
Organism: Heterodera glycines Gene Locus: chr2:8109441-8111509 Feature type: polypeptideProtein Sequence
Length: 502
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 1.482 | 0.978 | 0.275 | 1.096 | 1.43 | 0.759 | 0.797 | 0.93 | 1.05 | 0.755 | 1.289 | 0.941 | 1.264 | 1.138 | 1.764 | 1.11 | 0.694 | 0.919 | 0.234 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3546
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.761
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.166
|
0.096
|
0.003
|
0.600
|
0.280
|
0.536
|
0.682
|
0.071
|
0.357
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007025
|
1.000
|
1.000
|
Hsc_gene_4804.t1
|
Hsc_gene_4804.t1
|
— |
Q9Z1Z3.1 Epsin-2 [Rattus norvegicus]
|
AHA57452.1 epsin, partial [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.847|GO:0110165_0.840|GO:0005622_0.772|GO:0008150_0.734|GO:0016020_0.705|GO:0005737_0.638|GO:0009987_0.636|GO:0043226_0.635|GO:0043229_0.620|GO:0043227_0.552|GO:0003674_0.545|GO:0071944_0.539|GO:0043231_0.519|GO:0005886_0.501
|
IPR003903+195-214_220-239+|IPR008942+1-144_3-144+|IPR013809+13-144_18-140_19-144+
|
SM00273+19-144+|SM00726+195-214_220-239+
|
PF01417+18-140+ENTH_domain
|
G3DSA:1.25.40.90:FF:000002+1-144+epsin-2_isoform_X1
|
PTHR12276+3-493+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
163-502
|
1.000
|
1-162
|
1h0a_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.873
|
54851.900
|
5.930
|
-3.000
|
24.104
|
6.972
|
55.179
|
44.821
|
12.151
|
11.952
|
56.175
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2317.177
|
1463.848
|
1317.696
|
1402.907
|
1580.884
|
5096.423
|
3305.559
|
4286.117
|
1176.643
|
2335.128
|
1838.634
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.380
|
-0.199
|
0.198
|
0.141
|
1.704
|
-0.615
|
-0.359
|
— | — | — | — | — | — |
No JSON data available for plots.