Hg_chrom2_TN10mRNA_3735
Organism: Heterodera glycines Gene Locus: chr2:8121287-8122651 Feature type: polypeptideProtein Sequence
Length: 289
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.966 | 1.609 | 0.755 | 0.955 | 1.211 | 1.863 | 0.7 | 1.038 | 1.615 | 1.029 | 0.786 | 1.018 | 0.865 | 0.998 | 1.271 | 1.335 | 0.681 | 0.734 | 0.266 | 0.102 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3549
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.382
|
0.178
|
0.031
|
0.726
|
0.085
|
0.123
|
0.196
|
0.104
|
0.294
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007028
|
1.000
|
1.000
|
Hsc_gene_4808.t1
|
Hsc_gene_4808.t1
|
— |
Q3U0L2.1 Ankyrin repeat domain-containing protein 33B [Mus musculus]
|
KAI6202962.1 Ankyrin repeat protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0003674_0.843|GO:0005488_0.802|GO:0005515_0.767|GO:0019899_0.681|GO:0098772_0.672|GO:0030234_0.664|GO:0140678_0.655|GO:0004857_0.654|GO:0019902_0.654|GO:0019903_0.654|GO:0004864_0.650|GO:0004865_0.650|GO:0019208_0.650|GO:0019212_0.650|GO:0019888_0.650
|
IPR002110+57-87_63-157_91-120_126-155_126-158+|IPR036770+17-216_47-176+|IPR050842+26-169+
|
SM00248+57-87_91-120_126-155+
|
PF12796+63-157+Ankyrin_repeats_(3_copies)
|
— |
PTHR24173+26-169+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
228-289
|
1.000
|
1-227
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
31745.820
|
7.291
|
3.000
|
24.913
|
5.882
|
52.595
|
47.405
|
13.495
|
11.419
|
51.557
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
156.208
|
80.762
|
205.381
|
111.990
|
35.826
|
33.215
|
108.081
|
118.527
|
523.259
|
30.796
|
241.852
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.116
|
0.334
|
-0.766
|
-1.679
|
— |
1.711
|
1.738
|
— |
4.135
|
— | — | — | — |
No JSON data available for plots.