SCN Proteipedia

Hg_chrom2_TN10mRNA_3736

Organism: Heterodera glycines Gene Locus: chr2:8122990-8127205 Feature type: polypeptide

Protein Sequence

Length: 557

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.71	1.086	0.588	0.991	0.748	0.875	0.748	1.436	1.356	1.626	0.517	2.535	1.646	0.863	0.843	1.231	0.912	0.952	1.795	0.845	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3550	—	—	1.444	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	5.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.989

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.075	0.062	0.006	0.106	0.148	0.440	0.245	0.060	0.898	0.011

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007029	1.000	1.000	Hsc_gene_4809.t1	Hsc_gene_4809.t1	—	Q09460.2 Calcitonin receptor-like protein 1 [Caenorhabditis elegans]	KHN82409.1 Calcitonin receptor-like protein 1 [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0004930\|GO:0007166\|GO:0007186\|GO:0016020	GO:0008150_0.968\|GO:0009987_0.860\|GO:0065007_0.844\|GO:0005575_0.836\|GO:0050789_0.830\|GO:0110165_0.815\|GO:0050896_0.769\|GO:0003674_0.764\|GO:0050794_0.754\|GO:0051716_0.732\|GO:0007154_0.731\|GO:0023052_0.730\|GO:0007165_0.702\|GO:0071944_0.701\|GO:0005886_0.700\|GO:0016020_0.700\|GO:0004888_0.666\|GO:0038023_0.666\|GO:0060089_0.666\|GO:0007186_0.648\|GO:0005622_0.634\|GO:0004930_0.553\|GO:0023051_0.546\|GO:0032501_0.546\|GO:0010646_0.543\|GO:0005488_0.541\|GO:0048583_0.525\|GO:0009966_0.515\|GO:0003824_0.505\|GO:0035556_0.504\|GO:0141124_0.504\|GO:1902531_0.502	IPR000832+160-422_163-187_195-219_246-269_284-309_328-353_372-392_408-429+\|IPR001879+45-138_65-143_68-135+\|IPR017981+161-430+\|IPR017983+418-433+\|IPR036445+35-142_60-136+\|IPR050332+39-454+	SM00008+65-143+	PF00002+160-422+7_transmembrane_receptor_(Secretin_family)\|PF02793+68-135+Hormone_receptor_domain	—	PTHR45620+39-454+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	518-557	1.000	1-517	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.742	62681.980	7.278	7.000	18.133	14.004	40.395	59.605	10.413	7.720	48.115

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	orange	464.424	441.612	622.491	431.181	150.137	101.656	259.075	729.245	1003.113	253.745	574.903

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.265	-0.172	-0.421	-1.554	-0.548	1.362	2.744	-1.351	—	—	—	—	—

No JSON data available for plots.

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