Hg_chrom2_TN10mRNA_3737
Organism: Heterodera glycines Gene Locus: chr2:8132675-8135372 Feature type: polypeptideProtein Sequence
Length: 361
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.676 | 1.16 | 0.907 | 0.86 | 1.431 | 0.284 | 0.561 | 0.693 | 1.231 | 1.235 | 0.672 | 1.467 | 1.693 | 1.332 | 1.696 | 1.148 | 0.727 | 1.385 | 0.213 | 0.326 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3551
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.872
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.329
|
0.118
|
0.008
|
0.744
|
0.143
|
0.442
|
0.133
|
0.002
|
0.318
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007030
|
1.000
|
1.000
|
Hsc_gene_4810.t2
|
Hsc_gene_4810.t1;Hsc_gene_4810.t2
|
— |
Q9TYT3.2 SHC-transforming protein homolog 1 [Caenorhabditis elegans]
|
XP_042936891.1 SH2 domain containing protein [Brugia malayi];CRZ23308.1 BMA-SHC-1 [Brugia malayi];VIO97192.1 SH2 domain containing protein [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.873|GO:0005575_0.796|GO:0110165_0.791|GO:0009987_0.775|GO:0065007_0.691|GO:0050789_0.678|GO:0005622_0.675|GO:0003674_0.661|GO:0050896_0.618|GO:0050794_0.609|GO:0005737_0.576|GO:0005488_0.575|GO:0051716_0.543|GO:0005515_0.521|GO:0007154_0.504|GO:0023052_0.503
|
IPR000980+265-343_267-337_267-357+|IPR006020+20-179_22-153_25-157+|IPR011993+10-172+|IPR036860+240-358_257-360+
|
SM00252+265-343+|SM00462+20-179+
|
PF00017+267-337+SH2_domain|PF00640+25-157+Phosphotyrosine_interaction_domain_(PTB/PID)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-361
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
40568.710
|
6.360
|
-0.500
|
27.701
|
8.864
|
46.260
|
53.740
|
14.127
|
13.573
|
51.524
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
919.661
|
1398.178
|
909.205
|
906.366
|
717.946
|
776.298
|
573.388
|
1016.320
|
1607.753
|
456.064
|
949.645
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.852
|
-0.762
|
— |
-0.369
|
— |
-0.428
|
0.285
|
-0.685
|
— | — | — | — | — |
No JSON data available for plots.