Hg_chrom2_TN10mRNA_3739
Organism: Heterodera glycines Gene Locus: chr2:8143040-8145737 Feature type: polypeptideProtein Sequence
Length: 528
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.233 | 1.233 | 0.964 | 0.392 | 1.736 | 1.554 | 0.541 | 1.136 | 0.547 | 1.203 | 0.775 | 1.56 | 1.315 | 0.583 | 1.43 | 1.109 | 0.838 | 0.545 | 1.457 | 0.613 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3553
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.701
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RKIMEGLPTEEKRKGT,KRKGTTMEQSWEKAQRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.559
|
0.142
|
0.009
|
0.589
|
0.086
|
0.195
|
0.160
|
0.621
|
0.108
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007032
|
1.000
|
1.000
|
Hsc_gene_4812.t1
|
Hsc_gene_4812.t1
|
— |
A0A1L8FDW4.1 Peroxisomal targeting signal 1 receptor [Xenopus laevis]
|
KAI1697605.1 tetratricopeptide repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.873|GO:0110165_0.873|GO:0005622_0.826|GO:0008150_0.807|GO:0009987_0.750|GO:0005737_0.675|GO:0016020_0.656|GO:0051179_0.577|GO:0003674_0.571|GO:0071840_0.563|GO:0016043_0.559|GO:0043226_0.556|GO:0051234_0.556|GO:0043229_0.541|GO:0005488_0.540|GO:0006810_0.518|GO:0051641_0.518|GO:0006996_0.516|GO:0043227_0.509
|
IPR011990+207-518_214-494+|IPR019734+229-262_263-296_373-406_407-440_441-474+|IPR024111+57-509+
|
SM00028+229-262_263-296_373-406_407-440_441-474+
|
PF13432+238-295_416-474+Tetratricopeptide_repeat
|
— |
PTHR10130+57-509+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-154
|
1.000
|
155-528
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
60190.930
|
5.051
|
-13.000
|
30.114
|
10.985
|
54.356
|
45.644
|
14.394
|
15.720
|
46.402
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1608.707
|
1312.020
|
1322.535
|
1306.539
|
1232.992
|
1322.465
|
1365.505
|
1388.473
|
3709.171
|
787.265
|
2039.511
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.218
|
-0.143
|
— |
-0.116
|
— | — | — | — |
2.102
|
— | — | — | — |
No JSON data available for plots.