SCN Proteipedia

Hg_chrom2_TN10mRNA_3742

Organism: Heterodera glycines Gene Locus: chr2:8149955-8154737 Feature type: polypeptide

Protein Sequence

Length: 1,061

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.767	0.789	0.908	0.78	1.712	1.015	0.92	1.367	0.859	1.223	1.171	1.275	0.733	1.251	1.5	1.118	0.711	0.614	1.015	0.36	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3556	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.930

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KKRKK,RRTNEERRRVLKKLVR,RKRKKSKETEEDRGRKS,RREKKLTEEEERKRHLR,RKSDEEAEKRGKSKEKRE,KKFRLKVFGEAKQCKQRKV,KRGKRSDRKDTLERRSDRR,KRSDRKDTLERRSDRRKDE	—	—	—	—	—	—	0.000	—	—	0.244	0.111	0.014	0.677	0.190	0.326	0.273	0.004	0.583	0.070

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003383	1.000	2.000	Hsc_gene_4815.t1;Hsc_gene_4815.t2	—	—	G5EBZ8.1 Ack-related non-receptor tyrosine kinase [Caenorhabditis elegans]	KAH7724377.1 Protein ARK-1 a [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005524\|GO:0006468	GO:0008150_0.953\|GO:0009987_0.908\|GO:0005575_0.768\|GO:0110165_0.768\|GO:0065007_0.749\|GO:0050789_0.740\|GO:0003674_0.722\|GO:0050794_0.714\|GO:0032502_0.689\|GO:0048856_0.667\|GO:0005622_0.660\|GO:0003824_0.658\|GO:0050896_0.658\|GO:0140096_0.658\|GO:0032501_0.654\|GO:0051716_0.627\|GO:0007154_0.622\|GO:0023052_0.618\|GO:0004672_0.612\|GO:0016301_0.612\|GO:0016740_0.612\|GO:0016772_0.612\|GO:0016773_0.612\|GO:0007165_0.602\|GO:0007275_0.593\|GO:0016020_0.589\|GO:0048869_0.536\|GO:0030154_0.527\|GO:0071944_0.519\|GO:0071840_0.510\|GO:0016043_0.502	IPR000095+506-520+\|IPR000719+137-410+\|IPR001245+138-402_218-231_257-275_309-319_328-350_373-395+\|IPR008266+263-275+\|IPR011009+125-401+\|IPR017441+143-172+\|IPR020635+137-402+\|IPR050198+119-404+	SM00219+137-402+	PF07714+138-402+Protein_tyrosine_and_serine/threonine_kinase\|PF22931+19-74+SAM_domain-like	G3DSA:1.10.510.10:FF:000521+130-407+Tyrosine-protein_kinase_pr2	PTHR24418+119-404+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-15;471-1061	1.000	16-470	7kp6_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.781	118691.190	7.317	12.500	33.082	7.917	52.592	47.408	17.813	15.269	47.691

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2998.535	3899.814	2339.116	1878.569	1707.284	2546.268	2280.839	3514.925	6415.457	1494.444	3603.450

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.967	-1.191	-0.208	-0.170	0.592	—	—	—	1.998	-1.597	—	—	—

No JSON data available for plots.

Back to Browser