Hg_chrom2_TN10mRNA_3747
Organism: Heterodera glycines Gene Locus: chr2:8166759-8169237 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 0.916 | 0.895 | 0.339 | 0.919 | 1.161 | 0.726 | 1.476 | 1.006 | 1.277 | 0.507 | 1.042 | 1.476 | 1.666 | 1.486 | 1.265 | 0.678 | 1.133 | 0.909 | 0.521 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3560
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
69-92
|
0.999
|
— | — |
0.000
|
— | — |
0.265
|
0.160
|
0.027
|
0.541
|
0.172
|
0.202
|
0.224
|
0.006
|
0.259
|
0.253
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007035
|
1.000
|
1.000
|
Hsc_gene_4820.t1
|
Hsc_gene_4820.t1
|
— |
G5ECY0.1 Disks large homolog 1 [Caenorhabditis elegans]
|
KAI1724132.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.873|GO:0110165_0.865|GO:0008150_0.796|GO:0016020_0.750|GO:0003674_0.730|GO:0009987_0.686|GO:0005622_0.684|GO:0071944_0.621|GO:0005886_0.600|GO:0005488_0.594|GO:0005737_0.569|GO:0065007_0.568|GO:0043226_0.557|GO:0005515_0.547|GO:0050789_0.525
|
IPR001478+229-318_235-314_235-315_237-318_409-486_410-489_412-488_417-492+|IPR015143+97-145+|IPR036034+211-316_218-318_402-497_404-508+|IPR036892+96-143+|IPR050614+183-317+
|
SM00228+237-318_417-492+
|
PF00595+235-314_412-488+PDZ_domain|PF09058+97-145+L27_1
|
— |
PTHR23119+183-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
169-214;342-405;504-508
|
3.000
|
1-168;215-341;406-503
|
7cqf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.851
|
56525.360
|
7.843
|
8.500
|
24.016
|
11.220
|
45.472
|
54.528
|
13.583
|
10.433
|
52.362
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1360.297
|
2195.345
|
1596.480
|
852.556
|
867.878
|
1666.654
|
2153.052
|
2868.515
|
869.159
|
724.249
|
786.354
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.689
|
-1.502
|
-0.796
|
— |
0.957
|
0.380
|
0.681
|
-0.272
|
— | — | — | — | — |
No JSON data available for plots.