Hg_chrom2_TN10mRNA_3749
Organism: Heterodera glycines Gene Locus: chr2:8173734-8176488 Feature type: polypeptideProtein Sequence
Length: 724
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.964 | 0.899 | 1.005 | 0.476 | 1.335 | 1.877 | 0.493 | 1.381 | 1.197 | 1.269 | 0.816 | 1.137 | 1.228 | 1.328 | 1.494 | 0.73 | 1.132 | 0.628 | 0.956 | 0.162 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3562
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKNVDHLERTSRRKLA,RRKLAEEIVTVINRDRSR,LRKRQTKNARHTRENKREERRTKMAKATKARW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.874
|
0.146
|
0.025
|
0.344
|
0.073
|
0.048
|
0.038
|
0.013
|
0.071
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000277
|
7.000
|
2.000
|
Hsc_gene_19559.t1;Hsc_gene_22469.t1
|
Hsc_gene_12229.t1;Hsc_gene_12229.t3;Hsc_gene_23969.t2;Hsc_gene_3014.t1;Hsc_gene_7821.t1
|
— | — |
GFN93402.1 amine oxidase [Plakobranchus ocellatus]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009689+272-411+
|
— |
PF06918+272-411+Protein_of_unknown_function_(DUF1280)
|
— |
PTHR31424+324-538+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-222;722-724
|
1.000
|
223-721
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
82213.300
|
6.842
|
4.000
|
29.006
|
8.978
|
52.210
|
47.790
|
15.470
|
13.536
|
46.271
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
salmon
|
1985.866
|
1768.772
|
2552.604
|
1651.653
|
1662.777
|
1717.902
|
993.809
|
1807.797
|
1455.864
|
3038.024
|
2359.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.301
|
-0.236
|
-0.520
|
— | — |
-0.780
|
— |
-0.720
|
— | — | — | — |
3.577
|
No JSON data available for plots.