SCN Proteipedia

Hg_chrom2_TN10mRNA_3750

Organism: Heterodera glycines Gene Locus: chr2:8176553-8180863 Feature type: polypeptide

Protein Sequence

Length: 687

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.677	0.914	1.694	0.602	1.941	0.896	0.693	1.456	1.1	1.141	1.081	1.541	1.051	0.532	1.396	0.811	0.978	0.706	0.448	0.557	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3563	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.940

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.835	0.132	0.008	0.315	0.062	0.068	0.092	0.026	0.113	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007037	1.000	1.000	Hsc_gene_4823.t1	Hsc_gene_4823.t1	—	Q95QG8.2 RNA polymerase II subunit A C-terminal domain phosphatase [Caenorhabditis elegans]	KAI1707444.1 NLI interacting factor-like phosphatase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004721\|GO:0005634\|GO:0008420	GO:0008150_0.953\|GO:0009987_0.845\|GO:0065007_0.796\|GO:0050789_0.782\|GO:0003674_0.776\|GO:0050794_0.767\|GO:0005575_0.765\|GO:0110165_0.762\|GO:0005622_0.722\|GO:0008152_0.709\|GO:0043170_0.694\|GO:0016020_0.685\|GO:0044237_0.684\|GO:0009058_0.679\|GO:0044249_0.670\|GO:0009059_0.667\|GO:0043226_0.665\|GO:0019222_0.661\|GO:0044238_0.660\|GO:0010467_0.657\|GO:0031323_0.653\|GO:0060255_0.651\|GO:0043229_0.645\|GO:0009889_0.635\|GO:0031326_0.635\|GO:0010556_0.631\|GO:0010468_0.630\|GO:0003824_0.625\|GO:0006139_0.624\|GO:0090304_0.609\|GO:0043227_0.606\|GO:0080090_0.603\|GO:0034654_0.601\|GO:0141187_0.601\|GO:0016070_0.597\|GO:0016787_0.596\|GO:0140096_0.595\|GO:0032774_0.589\|GO:0043231_0.586\|GO:0019219_0.577\|GO:0051252_0.572\|GO:0006351_0.568\|GO:0016788_0.567\|GO:2001141_0.565\|GO:0006355_0.564\|GO:0006366_0.558\|GO:0042578_0.557\|GO:0004721_0.556\|GO:0006357_0.556\|GO:0016791_0.556\|GO:0005634_0.540\|GO:0004722_0.523	IPR001357+374-467_376-457_401-449+\|IPR004274+93-258_96-242_99-238+\|IPR011947+93-238+\|IPR023214+89-282+\|IPR036412+90-257+\|IPR036420+357-469_378-467+\|IPR039189+19-489+	SM00292+376-457+\|SM00577+96-242+	PF03031+99-238+NLI_interacting_factor-like_phosphatase\|PF12738+401-449+twin_BRCT_domain	—	PTHR23081+19-489+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-25;248-334;470-687	2.000	26-247;335-469	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.870	78619.610	4.632	-38.000	37.846	9.170	56.914	43.086	16.885	20.961	45.706

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2234.722	2552.232	1732.289	1571.696	1759.621	1473.244	1890.450	1390.592	2562.164	3216.490	2936.065

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.790	-0.836	—	0.131	-0.242	0.370	-0.188	0.585	—	—	—	—	—

No JSON data available for plots.

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