SCN Proteipedia

Hg_chrom2_TN10mRNA_3751

Organism: Heterodera glycines Gene Locus: chr2:8180960-8183742 Feature type: polypeptide

Protein Sequence

Length: 516

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.834	0.946	0.987	0.401	1.292	1.193	0.784	1.066	1.464	1.388	1.468	1.254	0.915	0.634	1.226	0.72	1.017	0.94	0.149	0.627	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3564	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRK,KRLGALHKFKKKDRP,RKHQKATVKTDRRRRKDN,KKKLAKHGEDEEEEAKLKR,KKLAKHGEDEEEEAKLKRR,RRKSKKGIFDRTIQKESKR,RKSKKGIFDRTIQKESKRK,KKGIFDRTIQKESKRKMKI,KRGIGDEGDELEPARKHQK	—	—	—	—	—	—	0.000	—	—	0.921	0.067	0.018	0.186	0.029	0.009	0.041	0.004	0.047	0.047

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007038	1.000	1.000	Hsc_gene_4824.t1	Hsc_gene_4824.t1	—	P34580.1 Putative ATP-dependent RNA helicase T26G10.1 [Caenorhabditis elegans]	KAI1719641.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003724\|GO:0005524	GO:0005575_0.891\|GO:0110165_0.889\|GO:0005622_0.824\|GO:0008150_0.749\|GO:0043226_0.734\|GO:0043229_0.730\|GO:0016020_0.726\|GO:0009987_0.676\|GO:0043227_0.628\|GO:0043231_0.606\|GO:0003674_0.586\|GO:0008152_0.526\|GO:0044238_0.521\|GO:0005634_0.507\|GO:0043170_0.505	IPR000629+237-245+\|IPR001650+314-462_315-423_342-423+\|IPR011545+114-279+\|IPR014001+108-306_120-291+\|IPR014014+89-117+\|IPR027417+45-294_158-443_309-513+\|IPR044765+91-292+\|IPR050079+31-513+	SM00487+108-306+\|SM00490+342-423+	PF00270+114-279+DEAD/DEAH_box_helicase\|PF00271+315-423+Helicase_conserved_C-terminal_domain	—	PTHR47959+31-513+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-55;477-516	1.000	56-476	3ber_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.745	57917.780	9.664	18.500	31.008	7.752	50.969	49.031	17.829	13.178	45.155

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	yellow	1581.501	1137.421	1044.351	1702.555	1921.307	1627.481	1387.972	1164.791	3120.672	833.859	1813.922

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.353	0.445	0.814	0.142	-0.225	-0.219	-0.588	0.396	—	—	—	—	—

No JSON data available for plots.

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