Hg_chrom2_TN10mRNA_3752
Organism: Heterodera glycines Gene Locus: chr2:8184739-8187811 Feature type: polypeptideProtein Sequence
Length: 625
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.521 | 1.116 | 1.338 | 0.717 | 1.227 | 0.985 | 0.648 | 1.36 | 1.209 | 1.535 | 0.848 | 1.412 | 1.6 | 0.646 | 1.273 | 1.12 | 0.603 | 0.897 | 1.231 | 0.8 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3565
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.209
|
0.214
|
0.042
|
0.570
|
0.178
|
0.525
|
0.531
|
0.167
|
0.137
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007039
|
1.000
|
1.000
|
Hsc_gene_4825.t1
|
Hsc_gene_4825.t1
|
— |
Q9CXF4.1 TBC1 domain family member 15 [Mus musculus]
|
KAF7637101.1 Rab-GAP TBC domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.906|GO:0110165_0.894|GO:0016020_0.804|GO:0005622_0.799|GO:0008150_0.788|GO:0005737_0.744|GO:0043226_0.733|GO:0043227_0.710|GO:0043229_0.700|GO:0043231_0.667|GO:0003674_0.666|GO:0009987_0.649|GO:0005488_0.584|GO:0005515_0.555
|
IPR000195+317-555_320-530_324-549+|IPR021935+45-194+|IPR035969+303-489_465-586+
|
SM00164+317-555+
|
PF00566+324-549+Rab-GTPase-TBC_domain|PF12068+45-194+Rab-binding_domain_(RBD)
|
G3DSA:1.10.472.80:FF:000005+465-594+TBC1_domain_family_member_15|G3DSA:1.10.8.270:FF:000005+343-456+TBC1_domain_family_member_15
|
PTHR22957+263-577+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;619-625
|
1.000
|
14-618
|
5tuc_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
72012.950
|
5.534
|
-9.500
|
29.280
|
12.800
|
49.440
|
50.560
|
14.560
|
14.720
|
44.960
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3378.621
|
2369.665
|
2600.410
|
1860.905
|
2076.539
|
2356.000
|
2704.345
|
3153.911
|
3975.339
|
5379.299
|
4777.602
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.486
|
-0.374
|
0.126
|
0.197
|
0.209
|
0.316
|
— | — | — | — | — | — |
No JSON data available for plots.