Hg_chrom2_TN10mRNA_3753
Organism: Heterodera glycines Gene Locus: chr2:8188028-8190865 Feature type: polypeptideProtein Sequence
Length: 634
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.082 | 1.027 | 0.918 | 0.816 | 1.13 | 1.052 | 1.145 | 1.025 | 1.087 | 1.13 | 0.956 | 1.485 | 1.095 | 0.94 | 1.191 | 0.879 | 0.776 | 0.836 | 0.607 | 0.696 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3566
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-25
|
0.764
|
0.534
|
0.000
|
0.000
|
0.170
|
0.199
|
0.134
|
0.258
|
0.135
|
0.076
|
0.155
|
0.020
|
0.138
|
0.900
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007040
|
1.000
|
1.000
|
Hsc_gene_4826.t1
|
Hsc_gene_4826.t1
|
— |
Q21388.2 Zinc metalloproteinase nas-10 [Caenorhabditis elegans]
|
KAI1708218.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.752|GO:0005575_0.648|GO:0003674_0.637|GO:0110165_0.634
|
IPR001506+386-593_397-592_420-438_479-497_498-515_537-552_579-592+|IPR003582+596-634_597-634+|IPR006026+394-542+|IPR024079+299-594+|IPR034035+401-591+
|
SM00235+394-542+
|
PF01400+397-592+Astacin_(Peptidase_family_M12A)|PF01549+596-634+ShK_domain-like
|
— |
PTHR10127+301-629+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
40-113;336-391
|
3.000
|
1-39;114-335;392-634
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
69260.810
|
7.705
|
8.500
|
26.025
|
9.148
|
45.426
|
54.574
|
14.196
|
11.830
|
52.050
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
1366.857
|
24.382
|
586.721
|
1227.355
|
3817.645
|
4287.072
|
1830.925
|
1716.748
|
548.029
|
509.910
|
526.246
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.359
|
5.515
|
1.173
|
1.605
|
0.181
|
-1.217
|
-1.425
|
— | — | — |
3.980
|
— | — |