Hg_chrom2_TN10mRNA_3754
Organism: Heterodera glycines Gene Locus: chr2:8191447-8195575 Feature type: polypeptideProtein Sequence
Length: 588
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.692 | 1.463 | 0.309 | 1.056 | 0.765 | 0.872 | 0.547 | 0.765 | 1.285 | 1.471 | 0.49 | 1.701 | 1.464 | 0.654 | 1.458 | 1.628 | 1.171 | 1.108 | 1.047 | 0.9 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3567
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.587
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
3-25
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.129
|
0.130
|
0.006
|
0.119
|
0.204
|
0.191
|
0.163
|
0.003
|
0.901
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007041
|
1.000
|
1.000
|
Hsc_gene_4827.t1
|
Hsc_gene_4827.t1
|
— |
Q23497.2 Galanin-like G-protein coupled receptor npr-9 [Caenorhabditis elegans]
|
KAF7637095.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.931|GO:0009987_0.821|GO:0065007_0.766|GO:0050789_0.747|GO:0003674_0.727|GO:0005575_0.725|GO:0110165_0.725|GO:0050794_0.722|GO:0050896_0.687|GO:0007154_0.671|GO:0023052_0.670|GO:0051716_0.650|GO:0007165_0.611|GO:0005488_0.601|GO:0060089_0.597|GO:0016020_0.595|GO:0038023_0.586|GO:0004888_0.584|GO:0005886_0.572|GO:0071944_0.572|GO:0007186_0.563
|
IPR000276+67-91_76-388_82-373_99-120_144-166_150-166_237-260_310-334_355-381+|IPR017452+82-373+
|
SM01381+76-388+
|
PF00001+82-373+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR45695+54-446+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
420-588
|
1.000
|
1-419
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
66148.520
|
9.663
|
28.500
|
18.197
|
11.224
|
46.429
|
53.571
|
11.905
|
6.293
|
50.850
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
282.366
|
40.473
|
276.170
|
139.503
|
55.550
|
34.642
|
113.847
|
203.369
|
1061.352
|
115.504
|
520.867
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.541
|
1.648
|
-0.877
|
-1.357
|
-0.669
|
1.728
|
2.454
|
-0.695
|
3.072
|
-2.734
|
— | — | — |
No JSON data available for plots.