Hg_chrom2_TN10mRNA_3758
Organism: Heterodera glycines Gene Locus: chr2:8209799-8211654 Feature type: polypeptideProtein Sequence
Length: 163
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.713 | 0.999 | 1.004 | 1.481 | 0.716 | 1.573 | 0.876 | 0.92 | 1.091 | 0.995 | 0.837 | 1.804 | 1.193 | 1.18 | 0.876 | 1.227 | 0.805 | 1.208 | 1.416 | 0.361 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3571
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
14-35
|
0.994
|
26-54
|
0.972
|
— | — |
0.000
|
— | — |
0.104
|
0.962
|
0.208
|
0.122
|
0.021
|
0.030
|
0.048
|
0.053
|
0.061
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007044
|
1.000
|
1.000
|
Hsc_gene_4831.t1
|
Hsc_gene_4831.t1
|
— |
Q5R7Q6.1 Oxidoreductase-like domain-containing protein 1 [Pongo abelii]
|
KAF7637128.1 Oxidoreductase-like domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.906|GO:0110165_0.882|GO:0005622_0.803|GO:0005737_0.777|GO:0016020_0.776|GO:0043226_0.753|GO:0043229_0.731|GO:0043227_0.726|GO:0043231_0.711|GO:0005739_0.567
|
IPR019180+88-122+|IPR039251+83-160+
|
— |
PF09791+88-122+Oxidoreductase-like_protein,_N-terminal
|
— |
PTHR21193+83-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-163
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
17935.550
|
7.127
|
1.500
|
21.472
|
9.202
|
45.399
|
54.601
|
11.656
|
9.816
|
55.215
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
851.351
|
1220.418
|
755.103
|
710.737
|
745.321
|
622.511
|
543.085
|
923.679
|
1363.437
|
631.763
|
945.338
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.923
|
-0.917
|
— | — |
-0.244
|
— |
0.464
|
-0.623
|
— | — | — | — | — |
No JSON data available for plots.