Hg_chrom2_TN10mRNA_3760
Organism: Heterodera glycines Gene Locus: chr2:8213480-8214329 Feature type: polypeptideProtein Sequence
Length: 163
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 0.428 | 0.781 | 0.423 | 2.249 | 1.416 | 0.657 | 0.92 | 1.5 | 1.161 | 0.744 | 2.165 | 1.875 | 0.59 | 1.502 | 0.964 | 1.006 | 0.837 | 0.472 | 0.18 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3573
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.776
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.838
|
0.156
|
0.002
|
0.487
|
0.033
|
0.021
|
0.034
|
0.019
|
0.066
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007046
|
1.000
|
1.000
|
Hsc_gene_4833.t1
|
Hsc_gene_4833.t1;Hsc_gene_4833.t2
|
— | — |
CAB3265147.1 prep homeobox protein [Phallusia mammillata]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.807|GO:0005488_0.790|GO:0005575_0.732|GO:0110165_0.728|GO:0008150_0.697|GO:0097159_0.678|GO:0005622_0.675|GO:0003676_0.667|GO:0003677_0.657|GO:0009987_0.657|GO:0016020_0.644|GO:0043226_0.608|GO:0065007_0.607|GO:0050789_0.595|GO:0043229_0.589|GO:0050794_0.567|GO:0043227_0.560|GO:0043231_0.539|GO:0032501_0.527|GO:0008152_0.524|GO:0043170_0.514|GO:0044237_0.513|GO:0032991_0.512|GO:0044238_0.510|GO:0048518_0.509|GO:0009058_0.508|GO:0032502_0.507|GO:0048856_0.506|GO:0048522_0.502|GO:0009059_0.501|GO:0044249_0.501
|
IPR032453+83-121+
|
— |
PF16493+83-121+N-terminal_of_Homeobox_Meis_and_PKNOX1
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
133-163
|
1.000
|
1-132
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
18761.340
|
4.644
|
-7.500
|
31.902
|
9.816
|
52.147
|
47.853
|
14.110
|
17.791
|
39.877
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
327.562
|
121.137
|
144.845
|
124.403
|
81.529
|
139.973
|
171.961
|
175.795
|
720.043
|
533.184
|
613.267
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.642
|
0.795
|
0.307
|
— | — | — | — | — | — | — |
No JSON data available for plots.