Hg_chrom2_TN10mRNA_3761
Organism: Heterodera glycines Gene Locus: chr2:8214642-8220942 Feature type: polypeptideProtein Sequence
Length: 1,162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.64 | 0.981 | 1.252 | 0.623 | 1.033 | 1.258 | 0.471 | 1.076 | 1.281 | 1.605 | 0.808 | 1.266 | 1.291 | 1.059 | 1.159 | 1.5 | 0.762 | 0.9 | 0.861 | 0.354 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3574
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
KKDALREMFSMDRKAKDR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.151
|
0.467
|
0.068
|
0.409
|
0.406
|
0.605
|
0.442
|
0.071
|
0.310
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003385
|
1.000
|
2.000
|
Hsc_gene_4834.t1;Hsc_gene_4834.t2
|
Hsc_gene_4834.t1;Hsc_gene_4834.t2
|
— |
Q6NRZ1.1 Bridge-like lipid transfer protein family member 3B [Xenopus laevis]
|
KAI1725770.1 UHRF1-binding protein 1-like [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.929|GO:0110165_0.922|GO:0005622_0.880|GO:0016020_0.853|GO:0003674_0.847|GO:0043226_0.824|GO:0043229_0.799|GO:0005488_0.798|GO:0005737_0.786|GO:0043227_0.771|GO:0005515_0.765|GO:0043231_0.753|GO:0071944_0.727|GO:0005886_0.713|GO:0042802_0.665|GO:0008150_0.617|GO:0005773_0.614|GO:0012505_0.599|GO:0031982_0.575|GO:0009987_0.561|GO:0097708_0.559|GO:0031410_0.558|GO:0005768_0.547
|
IPR026728+1-598+|IPR026854+2-104+
|
— |
PF12624+2-104+VPS13-like,_N-terminal
|
— |
PTHR22774+1-598+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
833-882;1143-1162
|
2.000
|
1-832;883-1142
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
130708.100
|
5.740
|
-11.500
|
26.248
|
9.122
|
50.516
|
49.484
|
13.167
|
13.081
|
48.967
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
6761.356
|
10268.873
|
4460.800
|
4335.651
|
3924.940
|
3583.045
|
3632.550
|
3789.417
|
3473.438
|
14227.624
|
9618.687
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.432
|
-1.381
|
— |
-0.175
|
-0.117
|
— | — | — |
-2.149
|
— | — | — | — |
No JSON data available for plots.