Hg_chrom2_TN10mRNA_3772
Organism: Heterodera glycines Gene Locus: chr2:8276253-8278739 Feature type: polypeptideProtein Sequence
Length: 280
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 1.661 | 1.169 | 0.369 | 0.833 | 1.19 | 0.68 | 1.786 | 1.349 | 1.593 | 1.136 | 0.84 | 1.091 | 0.618 | 1.166 | 0.816 | 0.82 | 0.866 | 0.824 | 1.261 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3585
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.578
|
0.407
|
0.102
|
0.771
|
0.196
|
0.234
|
0.139
|
0.016
|
0.098
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003388
|
2.000
|
1.000
|
Hsc_gene_6409.t1
|
— | — |
Q8VCX1.1 Aldo-keto reductase family 1 member D1 [Mus musculus]
|
KAI1709359.1 aldo/keto reductase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.833|GO:0003674_0.771|GO:0005575_0.708|GO:0110165_0.708|GO:0003824_0.654|GO:0008152_0.648|GO:0009987_0.639|GO:0005622_0.630|GO:0044238_0.617|GO:0016491_0.584|GO:0016614_0.547|GO:0016616_0.547|GO:0005737_0.529|GO:0065007_0.514|GO:0016020_0.508
|
IPR018170+47-64_128-145_234-249+|IPR020471+7-279_12-272_43-67_128-145_162-191_201-225+|IPR023210+25-266+|IPR036812+5-278_11-272+
|
— |
PF00248+25-266+Aldo/keto_reductase_family
|
G3DSA:3.20.20.100:FF:000002+7-277+2,5-diketo-D-gluconic_acid_reductase_A
|
PTHR43827+12-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-280
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
32211.750
|
9.132
|
10.000
|
28.214
|
12.857
|
50.714
|
49.286
|
16.786
|
11.429
|
45.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
tan
|
758.976
|
550.870
|
953.220
|
775.342
|
714.436
|
566.610
|
456.239
|
526.954
|
1811.781
|
257.808
|
923.797
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
0.356
|
-0.189
|
-0.149
|
-0.320
|
-0.307
|
— | — | — | — | — | — | — |
No JSON data available for plots.