SCN Proteipedia

Hg_chrom2_TN10mRNA_3773

Organism: Heterodera glycines Gene Locus: chr2:8280768-8286074 Feature type: polypeptide

Protein Sequence

Length: 1,017

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.846	0.755	1.055	0.136	1.901	1.614	0.691	1.229	0.568	0.877	1.49	1.388	1.229	1.683	1.565	0.744	0.532	0.566	0.983	0.521	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3586	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKR,KRQK,RKRR,KKEKEEKRKEREKAK,RRNSIWAIVKKRLDK,KKLEQDYREWMDRRRSQ,KKKSRKEKKAEKEREKLK,KRLAAESLEASNGKRRSD,RKREVAEELGEHLKERNR,KRRSDHDGVENGEKRKRKE,RRSDHDGVENGEKRKRKEP,RKRKEPLTAEEKALEERKR,KRKEPLTAEEKALEERKRE,RKEPLTAEEKALEERKREV,RKGQPPPPTRNEDPDRRRK	—	—	39-63	0.914	—	—	0.000	—	—	0.856	0.051	0.003	0.338	0.031	0.048	0.043	0.002	0.062	0.086

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007054	1.000	1.000	Hsc_gene_4844.t1	Hsc_gene_4844.t1;Hsc_gene_4844.t2;Hsc_gene_4844.t3	—	Q8CGF7.2 Transcription elongation regulator 1 [Mus musculus]	KAI1727342.1 FF domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0070063	GO:0003674_0.873\|GO:0005488_0.873\|GO:0005515_0.785\|GO:0005575_0.742\|GO:0110165_0.739\|GO:0005622_0.716\|GO:0016020_0.688\|GO:0008150_0.687\|GO:0043226_0.686\|GO:0043229_0.672\|GO:0009987_0.661\|GO:0043227_0.601\|GO:0005634_0.581\|GO:0043231_0.581\|GO:0008152_0.514\|GO:0043170_0.514\|GO:0006139_0.506\|GO:0009058_0.506\|GO:0009059_0.506\|GO:0010467_0.506\|GO:0044237_0.506\|GO:0044238_0.506\|GO:0044249_0.506\|GO:0090304_0.506\|GO:0034654_0.505\|GO:0016070_0.503	IPR001202+199-231_204-230_204-231_279-312_280-312_283-310_285-310_388-420_391-418_391-420+\|IPR002713+546-599_549-596_611-666_612-666_614-663_679-735_681-732_815-871_873-929_875-918_931-996_934-993+\|IPR036020+203-233_277-312_383-420+\|IPR036517+540-604_543-610_607-673_611-668_669-748_671-737_800-876_808-878_873-931_877-930_934-1000+\|IPR045148+38-1016+	SM00441+546-599_612-666_679-735_815-871_873-929_931-996+\|SM00456+199-231_280-312_388-420+	PF00397+283-310_391-418+WW_domain\|PF01846+549-596_614-663_681-732_875-918_934-993+FF_domain	G3DSA:2.20.70.10:FF:000049+375-443+Transcription_elongation_regulator_1-like	PTHR15377+38-1016+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-296;409-556;717-821;989-1017	3.000	297-408;557-716;822-988	8qo9_T	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.738	117120.650	8.381	15.500	37.168	9.931	55.162	44.838	19.961	17.207	43.461

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	yellow	6330.266	6643.696	8830.036	6867.277	6332.940	5138.139	5430.845	6570.953	8217.504	4351.580	6008.405

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.181	-0.089	-0.254	-0.149	-0.287	—	0.249	—	—	—	—	—	—

No JSON data available for plots.

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