Hg_chrom2_TN10mRNA_3775
Organism: Heterodera glycines Gene Locus: chr2:8289181-8290537 Feature type: polypeptideProtein Sequence
Length: 293
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.794 | 0.714 | 0.496 | 0.706 | 0.739 | 0.788 | 0.65 | 1.195 | 1.82 | 1.706 | 0.776 | 1.405 | 1.991 | 0.853 | 0.975 | 0.975 | 0.839 | 1.241 | 1.313 | 1.004 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3588
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.264
|
0.522
|
0.048
|
0.155
|
0.911
|
0.148
|
0.255
|
0.188
|
0.139
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007056
|
1.000
|
1.000
|
Hsc_gene_4846.t1
|
Hsc_gene_4846.t1
|
— |
Q9NA75.2 Trimeric intracellular cation channel type 1B.1 [Caenorhabditis elegans]
|
KAH7723121.1 Protein Y57A10A.10 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005267|GO:0016020|GO:0042802|GO:0071805
|
GO:0005575_0.750|GO:0008150_0.749|GO:0110165_0.740|GO:0016020_0.698|GO:0009987_0.697|GO:0006810_0.627|GO:0051179_0.627|GO:0051234_0.627|GO:0043226_0.604|GO:0003674_0.584|GO:0055085_0.583|GO:0043227_0.581|GO:0005622_0.551|GO:0006811_0.532|GO:0034220_0.532|GO:0098660_0.526|GO:0006812_0.519|GO:0098655_0.519|GO:0098662_0.517|GO:0071944_0.516|GO:0030001_0.511|GO:0043229_0.502
|
IPR007866+14-286_49-238+
|
— |
PF05197+49-238+TRIC_channel
|
— |
PTHR12454+14-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
276-293
|
1.000
|
1-275
|
5egi_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
33194.250
|
9.302
|
11.500
|
19.454
|
14.676
|
37.543
|
62.457
|
12.287
|
7.167
|
44.710
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
paleturquoise
|
695.602
|
651.812
|
1125.105
|
724.428
|
608.661
|
682.086
|
610.393
|
1454.796
|
956.549
|
129.368
|
483.874
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
— |
-0.526
|
-0.283
|
0.179
|
— |
0.990
|
-1.112
|
2.732
|
— | — | — | — |
No JSON data available for plots.