Hg_chrom2_TN10mRNA_3776
Organism: Heterodera glycines Gene Locus: chr2:8291203-8317676 Feature type: polypeptideProtein Sequence
Length: 3,592
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.868 | 0.919 | 0.876 | 0.634 | 1.151 | 1.028 | 0.988 | 1.35 | 1.25 | 1.087 | 0.717 | 0.884 | 0.998 | 1.215 | 1.375 | 0.97 | 0.936 | 1.206 | 1.071 | 0.475 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3589
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.524
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|extracellular
|
nucleus
|
PPPKRRW,RRDDEEWAEEPFRRPTK,RRGSAFSGRRFGFPRKRQW,KFWKKRRWRGRISLERGGK
|
— | — | — | — |
1-24
|
0.911
|
0.969
|
0.000
|
0.000
|
0.242
|
0.277
|
0.019
|
0.486
|
0.082
|
0.052
|
0.112
|
0.028
|
0.381
|
0.634
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007057
|
1.000
|
1.000
|
Hsc_gene_4851.t1
|
Hsc_gene_4847.t1;Hsc_gene_4848.t1;Hsc_gene_4851.t1
|
— |
D3YXG0.1 Hemicentin-1 [Mus musculus]
|
KAI6210041.1 EGF-like domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.857|GO:0110165_0.846|GO:0008150_0.769|GO:0009987_0.675|GO:0003674_0.588|GO:0005622_0.579|GO:0071944_0.543|GO:0005737_0.512
|
IPR003598+460-524_550-616_642-706_732-796_822-891_919-986_1020-1088_1114-1175_1203-1280_1309-1373_1400-1465_1493-1560_1587-1653_1679-1755_1781-1849_1875-1943_1969-2043_2089-2154_2181-2246_2273-2337_2365-2432_2459-2530_2759-2830_2858-2924_2952-3017_3042-3105_3132-3207_3234-3294_3324-3402_3428-3496+|IPR003599+454-535_544-627_636-717_726-807_816-902_913-997_1014-1099_1108-1186_1197-1291_1303-1384_1394-1476_1487-1571_1581-1664_1673-1766_1775-1860_1869-1954_1963-2054_2083-2165_2175-2257_2267-2348_2359-2443_2453-2541_2753-2841_2852-2935_2946-3028_3036-3116_3126-3220_3228-3305_3318-3413_3422-3507+|IPR007110+438-530_539-623_630-715_720-803_810-898_907-995_1000-1096_1102-1182_1189-1291_1294-1382_1386-1477_1479-1569_1574-1662_1667-1762_1769-1858_1863-1952_1957-2052_2075-2163_2168-2255_2260-2344_2351-2441_2446-2539_2745-2837_2844-2933_2938-3026_3031-3112_3119-3216_3221-3303_3308-3409_3416-3500+|IPR013098+630-710_811-901_909-995_1015-1098_1306-1381_1392-1473_1575-1661_1700-1765_1771-1859_1863-1953_1958-2053_2085-2164_2177-2256_2266-2347_2366-2442_2455-2539_2757-2840_2858-2930_2953-3027_3041-3115_3320-3412_3419-3498+|IPR013151+461-528+|IPR013783+453-536_537-626_627-716_717-806_807-902_903-997_1012-1108_1109-1194_1196-1289_1290-1397_1398-1472_1473-1568_1569-1664_1665-1771_1772-1862_1863-1958_1959-2053_2067-2163_2164-2254_2255-2344_2345-2439_2440-2542_2741-2837_2838-2933_2934-3030_3038-3113_3114-3218_3229-3305_3306-3413_3414-3520+|IPR036179+463-541_538-635_623-710_717-812_809-903_904-992_1015-1104_1098-1191_1199-1297_1307-1389_1383-1480_1488-1574_1571-1668_1676-1771_1765-1865_1859-1960_1950-2054_2074-2169_2176-2262_2256-2353_2348-2447_2442-2539_2745-2846_2858-2940_2934-3032_3027-3121_3115-3213_3231-3308_3318-3418_3415-3508+|IPR036465+55-230_56-232+|IPR050958+1393-1569+
|
SM00408+460-524_550-616_642-706_732-796_822-891_919-986_1020-1088_1114-1175_1203-1280_1309-1373_1400-1465_1493-1560_1587-1653_1679-1755_1781-1849_1875-1943_1969-2043_2089-2154_2181-2246_2273-2337_2365-2432_2459-2530_2759-2830_2858-2924_2952-3017_3042-3105_3132-3207_3234-3294_3324-3402_3428-3496+|SM00409+454-535_544-627_636-717_726-807_816-902_913-997_1014-1099_1108-1186_1197-1291_1303-1384_1394-1476_1487-1571_1581-1664_1673-1766_1775-1860_1869-1954_1963-2054_2083-2165_2175-2257_2267-2348_2359-2443_2453-2541_2753-2841_2852-2935_2946-3028_3036-3116_3126-3220_3228-3305_3318-3413_3422-3507+
|
PF00047+461-528+Immunoglobulin_domain|PF07679+630-710_811-901_909-995_1015-1098_1306-1381_1392-1473_1575-1661_1700-1765_1771-1859_1863-1953_1958-2053_2085-2164_2177-2256_2266-2347_2366-2442_2455-2539_2757-2840_2858-2930_2953-3027_3041-3115_3320-3412_3419-3498+Immunoglobulin_I-set_domain|PF13895+1492-1561+Immunoglobulin_domain|PF13927+538-612_719-793_1101-1172_1202-1277_3118-3204+Immunoglobulin_domain
|
G3DSA:2.60.40.10:FF:000032+626-718_1384-1480_1955-2056_2165-2260_3412-3510+palladin_isoform_X1|G3DSA:2.60.40.10:FF:000107+1862-1954+Myosin,_light_chain_kinase_a|G3DSA:2.60.40.10:FF:000503+1569-1662_1764-1858_2070-2163_2346-2441_2933-3026+Hemicentin_1
|
PTHR45080+1393-1569+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1910-2035;2472-2611;2699-2754;3592-3592
|
4.000
|
1-1909;2036-2471;2612-2698;2755-3591
|
2xy1_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
395127.310
|
7.301
|
39.500
|
25.891
|
9.298
|
46.353
|
53.647
|
14.170
|
11.720
|
53.146
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1865.673
|
948.656
|
1574.731
|
835.551
|
1115.356
|
2114.202
|
1240.018
|
1696.636
|
4362.404
|
1318.587
|
2623.080
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
-0.320
|
-0.805
|
0.386
|
0.938
|
-0.761
|
-0.424
|
-0.309
|
— | — | — | — | — |