Hg_chrom2_TN10mRNA_3778
Organism: Heterodera glycines Gene Locus: chr2:8318851-8320052 Feature type: polypeptideProtein Sequence
Length: 185
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.314 | 1.383 | 1.081 | 1.678 | 0.991 | 0.416 | 0.837 | 0.811 | 1.321 | 0.95 | 0.983 | 1.908 | 2.252 | 1.143 | 1.103 | 1.081 | 0.709 | 0.491 | 1.247 | 1.59 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3591
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_4852
|
— |
13-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RRFHCDQMTRPKRFKP
|
— | — | — | — |
1-26
|
0.988
|
1.000
|
0.000
|
0.000
|
0.243
|
0.426
|
0.045
|
0.153
|
0.181
|
0.157
|
0.288
|
0.027
|
0.393
|
0.842
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007059
|
1.000
|
1.000
|
Hsc_gene_4852.t1
|
Hsc_gene_4852.t1
|
— |
Q9U7D3.2 Warthog protein 5 [Caenorhabditis elegans]
|
KAI1715608.1 warthog protein 5 [Ditylenchus destructor]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.934|GO:0032501_0.760|GO:0032502_0.747|GO:0048856_0.747|GO:0007275_0.721|GO:0048731_0.712|GO:0022414_0.693|GO:0048513_0.689|GO:0009653_0.687|GO:0003006_0.685|GO:0048608_0.680|GO:0061458_0.680|GO:0007423_0.670|GO:0007548_0.670|GO:0009887_0.670|GO:0030539_0.670|GO:0035112_0.670|GO:0046661_0.670|GO:0048806_0.670|GO:0048808_0.670|GO:0090596_0.670|GO:0090597_0.670|GO:0090598_0.670
|
IPR052140+60-173+
|
— | — | — |
PTHR46706+60-173+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-185
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
21472.540
|
7.091
|
1.500
|
25.405
|
16.757
|
44.865
|
55.135
|
13.514
|
11.892
|
47.568
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
paleturquoise
|
792.187
|
686.285
|
1367.933
|
570.601
|
413.067
|
551.521
|
463.675
|
1295.166
|
1412.791
|
400.630
|
834.413
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
-0.404
|
-1.152
|
-0.499
|
0.432
|
-0.241
|
1.133
|
-1.342
|
— | — | — | — | — |