Hg_chrom2_TN10mRNA_3779
Organism: Heterodera glycines Gene Locus: chr2:8321588-8323521 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.082 | 0.908 | 0.874 | 0.414 | 1.902 | 1.54 | 0.715 | 1.502 | 0.734 | 0.852 | 1.229 | 1.943 | 1.001 | 0.462 | 1.164 | 0.987 | 0.788 | 1.138 | 0.693 | 0.442 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3592
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.889
|
0.174
|
0.036
|
0.666
|
0.079
|
0.020
|
0.070
|
0.086
|
0.126
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001854
|
1.000
|
3.000
|
Hsc_gene_23659.t1;Hsc_gene_4784.t1;Hsc_gene_9881.t1
|
Hsc_gene_4853.t1
|
— | — |
KAF7629286.1 TPR_REGION domain-containing protein [Meloidogyne graminicola]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.941|GO:0003674_0.678|GO:0005488_0.636|GO:0005575_0.631|GO:0110165_0.619|GO:0005515_0.609|GO:0005622_0.574|GO:0009987_0.526|GO:0016020_0.508|GO:0043226_0.507
|
IPR011990+20-222_28-191+|IPR019544+119-152+|IPR051730+4-264+
|
— |
PF10516+119-152+SHNi-TPR
|
— |
PTHR15081+4-264+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-41;201-333
|
1.000
|
42-200
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
37449.080
|
6.027
|
-3.000
|
33.033
|
9.009
|
54.655
|
45.345
|
16.817
|
16.216
|
46.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
516.859
|
203.163
|
217.793
|
199.408
|
346.182
|
284.043
|
771.294
|
205.163
|
196.096
|
1279.045
|
814.924
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.765
|
— |
1.454
|
-0.575
|
2.055
|
-2.836
|
— | — | — | — |
No JSON data available for plots.